Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18l11f
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 86 2e-17
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 40 0.002
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75... 32 0.47
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 31 0.82
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477 31 1.1
12_02_0456 - 19222153-19222311,19223005-19223379,19223926-192240... 28 5.8
09_01_0180 + 2632507-2634870 28 5.8
06_01_0422 + 3034556-3034777,3034859-3035138,3036398-3036483,303... 28 5.8
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 28 5.8
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101... 28 7.7
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 86.2 bits (204), Expect = 2e-17
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 10/213 (4%)
Frame = +2
Query: 50 YLELNKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNS 229
+ L++ ++ ++ +A+K A ++L AP ++ A CKVV ++ ++ALA + A+
Sbjct: 26 FTTLHRHIEAGEFPQAVKVADQVLAAAPGDEDAVRCKVVAHIKSDAIEKALAAIRAAER- 84
Query: 230 ALAADLLFEKAYAQYRLNSPKEALQTVDSAPELTPALKELRAQILYRLEQYQDCYNLYRD 409
L DL + KAY YR N +EAL + E T A+ +L +QI YRL + DC N Y
Sbjct: 85 -LPIDLSYCKAYCYYRQNKLQEALDLLKGQEE-TSAILQLESQIYYRLGRMNDCMNSYEK 142
Query: 410 LLKNTTDEYEDERKXXXXXXXXXXXXXXPTSELPQ---------FDENTYELAYNSGSTL 562
L K + + + + Q D ++ELAYNS +L
Sbjct: 143 LQKFKVESMDLKINIIAALVAAGRASEVQATMKAQKVDLSSRALRDTRSFELAYNSACSL 202
Query: 563 AMRGKYNEALSVLKRAEQACSES-VIDDGGTEE 658
KY+EA L A++ E ++D+ G ++
Sbjct: 203 IENKKYSEAKEQLDLAKRIGKEELMVDEYGDDD 235
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 39.9 bits (89), Expect = 0.002
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Frame = +2
Query: 47 AYLELNKFCQSSDYERALKAAGKILQIAPNEQKA----FHC---KVVCFLQLHNFKEALA 205
A E NKF + +YERAL LQIA + A C + VCFL+L + E +
Sbjct: 214 AKAEGNKFFGAGEYERALSQYETALQIAAELESAEDIRSACHSNRAVCFLKLGKYDETIK 273
Query: 206 TLTNA-KNSALAADLLFEKAYAQYRLNSPKEALQTVDSAPELTPALKELRAQILYRLE 376
T A + + L + A +L EA+ + EL P+ E + L+RLE
Sbjct: 274 ECTKALELNPSYLKALLRRGEAHEKLEHYDEAIADMKKIIELDPS-NEQAKRSLFRLE 330
>07_01_0101 -
752935-753223,753311-753408,753674-753764,753844-753882,
754019-754110,754535-754634,754742-754828,754949-755250,
756036-756242,756319-756405,756978-757058,757257-757365,
758037-758093,758188-758258,758414-758521,758874-758974,
759111-759177,759434-759535,759618-759662,759916-760511,
761956-762065,762165-762280
Length = 984
Score = 31.9 bits (69), Expect = 0.47
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +2
Query: 89 ERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNA-KNSALAADLLFEKAY 265
E+ L K+LQI + KA+H + + + + + A+ L+ A K+ + + L+ +A
Sbjct: 424 EKMLNNVEKVLQIDVSFGKAYHLRGILYHGMGRHRSAIKDLSVALKHESSNIECLYLRAS 483
Query: 266 AQYRLNSPKEALQTVDSAPELTPALKELRAQILYRLEQYQDCYNLY 403
+ + K A++ D +L L + +L L YQ LY
Sbjct: 484 CHHAIGEYKAAIKDYDDVLDL--ELDSMDKFVLQCLAFYQKEIALY 527
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 31.1 bits (67), Expect = 0.82
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +2
Query: 62 NKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNA-KNSALA 238
+++ DYE ++K LQ+ A++ V +L+ F+ A A + + +
Sbjct: 535 HEYSALEDYENSIKLYRSALQVDERHYNAWYGLGVVYLRQEKFEFAEHHFRRAFQINPCS 594
Query: 239 ADLLFEKAYAQYRLNSPKEALQTVDS---APELTPALKELRAQILYRLEQYQD 388
+ L+ A + L +EAL+ +++ A + P K +A IL L++Y D
Sbjct: 595 SVLMCYLGMALHALKRNEEALEMMENAIFADKKNPLPKYQKALILLGLQKYPD 647
>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
Length = 668
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +2
Query: 296 ALQTVDSAPELTPALK---ELRAQILYRLEQYQDCYNLYRDLL 415
AL VD+A EL+P ++ ELR + L L +Y+D + RD +
Sbjct: 49 ALGLVDAALELSPRMESALELRGRALLSLRRYRDVAEMLRDYI 91
>12_02_0456 -
19222153-19222311,19223005-19223379,19223926-19224047,
19224119-19224162,19224296-19224354,19224431-19224498,
19224707-19224851,19225243-19225440
Length = 389
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 185 NFKEALATLTNAKNSALAADLLFEKAYAQYRLNSPKEALQTVDSAPELTPALKELRAQIL 364
+ K +A L + +S+ AAD + + A + LNS E L+ + + + E + L
Sbjct: 109 SLKVVIACLGSLVHSSNAADNQEKLSSAMFCLNSTSEILKILKNNTYIRDTENEELTKHL 168
Query: 365 YRLEQYQDC 391
+EQ +DC
Sbjct: 169 LEIEQPKDC 177
>09_01_0180 + 2632507-2634870
Length = 787
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 56 ELNKFCQSSDYERALKAAGKILQIAPN---EQKAFHC-KVVCFLQLHNFKEALATLTNAK 223
E N+ QS DY AL+ L++AP ++ FH + C LQL +
Sbjct: 65 EGNRLFQSRDYGGALRQYELALRLAPRGHPDRAVFHSNRAACLLQLRPVDH--KAVAEEC 122
Query: 224 NSALAADLLFEKA 262
+ AL A+ LF +A
Sbjct: 123 SLALQAEPLFPRA 135
>06_01_0422 +
3034556-3034777,3034859-3035138,3036398-3036483,
3036614-3036837,3036911-3036971,3037634-3037828,
3037981-3038205
Length = 430
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 98 LKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALAT 208
L+ A K +++ P K + CK +HN+++A+ T
Sbjct: 215 LEDADKCIEVDPTFWKGYFCKGEVQFLMHNYEDAMTT 251
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Frame = +2
Query: 62 NKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSALAA 241
N+F + Y A+K + L+ P + + + + C+ +L E L +
Sbjct: 571 NEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTKLGAMPEGL----KDAEKCIEL 626
Query: 242 DLLFEKAYA-----QYRLNSPKEALQTVDSAPELTPALKEL 349
D F K Y Q+ + +AL+T + + P +EL
Sbjct: 627 DPTFSKGYTRKGAIQFFMKEYDKALETYQAGLKHDPNNQEL 667
>10_01_0078 -
1012031-1012084,1012998-1013105,1013610-1013661,
1013926-1016603
Length = 963
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 68 FCQSSDYERALKAAGKILQIAPNEQKAFHCKV-VCFLQLHNFKEALATLTNAKNSALAAD 244
+C+ + E AL G++ + A + + VC ++ KEA ATL LA D
Sbjct: 478 YCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPD 537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,019
Number of Sequences: 37544
Number of extensions: 323203
Number of successful extensions: 935
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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