Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18l11f
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical p... 99 1e-21
Z75526-7|CAE17729.1| 325|Caenorhabditis elegans Hypothetical pr... 35 0.045
AL021171-3|CAB54258.1| 749|Caenorhabditis elegans Hypothetical ... 31 0.56
AL021171-2|CAA15957.1| 747|Caenorhabditis elegans Hypothetical ... 31 0.56
Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amin... 29 3.9
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine re... 28 6.8
>U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical
protein F08D12.1 protein.
Length = 694
Score = 99 bits (238), Expect = 1e-21
Identities = 61/216 (28%), Positives = 104/216 (48%)
Frame = +2
Query: 14 MSANKENNLVQAYLELNKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFK 193
M+ L Q ++++ S DY++AL +A K+++ P E AF CK+V +QL +
Sbjct: 1 MADASAGGLYQCLTDISRADTSGDYQKALTSANKLIRKYPKETFAFKCKLVAQIQLSQYA 60
Query: 194 EALATLTNAKNSALAADLLFEKAYAQYRLNSPKEALQTVDSAPELTPALKELRAQILYRL 373
+AL + + + FEKAY YR + EA++ +++ + EL+AQ+ Y+
Sbjct: 61 DALELIRKTPAHQMG-HVGFEKAYIHYRQDELDEAIKELNTCDKDDVKALELKAQVFYKQ 119
Query: 374 EQYQDCYNLYRDLLKNTTDEYEDERKXXXXXXXXXXXXXXPTSELPQFDENTYELAYNSG 553
E YQ Y++Y LLKN +D+ DE + + E++Y YN
Sbjct: 120 ENYQQAYDIYLYLLKNHSDD-SDELRRANFLAVQARLEAQGVKQAVAETEDSYSQLYNRA 178
Query: 554 STLAMRGKYNEALSVLKRAEQACSESVIDDGGTEEE 661
K +AL L++A + C +S D+ E+E
Sbjct: 179 CVEIEAEKLPQALESLEKALKTCRKSFEDEDREEDE 214
>Z75526-7|CAE17729.1| 325|Caenorhabditis elegans Hypothetical
protein C06H2.7 protein.
Length = 325
Score = 35.1 bits (77), Expect = 0.045
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +2
Query: 56 ELNKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSAL 235
E+ K S+ +R A + Q + + C V L + F E +AT+ N K+ +
Sbjct: 159 EILKIFNKSNIQRVQLRAETVSQQTKDLINSLECMNV-ELNIGKFDEMVATVNNIKDLRI 217
Query: 236 AADLLFEKAYAQYRLNSPK-EALQTVDSAPELTPALKELRA 355
LLF + +RLN + A T S P + + E RA
Sbjct: 218 RQQLLFFQLITIFRLNIARINASVTAASLPLIVECINEWRA 258
>AL021171-3|CAB54258.1| 749|Caenorhabditis elegans Hypothetical
protein H04D03.2b protein.
Length = 749
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 597 TDKASLYFPRIAKVLPELYANSYVFSSNCGSSD 499
T + S++FPR PE Y YV S+C S+
Sbjct: 281 TTQKSIFFPRDRDYPPEFYTEPYVVLSSCSESE 313
>AL021171-2|CAA15957.1| 747|Caenorhabditis elegans Hypothetical
protein H04D03.2a protein.
Length = 747
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 597 TDKASLYFPRIAKVLPELYANSYVFSSNCGSSD 499
T + S++FPR PE Y YV S+C S+
Sbjct: 281 TTQKSIFFPRDRDYPPEFYTEPYVVLSSCSESE 313
>Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical
protein ZK829.2 protein.
Length = 905
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 161 VVCFLQLHN--FKEALATLTNAK-NSALAADLLFEKAYAQYRLNSPKEALQTVDSAPELT 331
++CF N F +AL N N +LA+ +L K + +NSPK + + +DSA +L
Sbjct: 740 LICFRAKSNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPKCSEEDLDSAYKLI 799
Query: 332 PALKELRAQILYRLE 376
++ YR+E
Sbjct: 800 CNEYDILKPFQYRIE 814
>Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amino
acid decarboxylaseprotein.
Length = 625
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +2
Query: 161 VVCFLQLHN--FKEALATLTNAK-NSALAADLLFEKAYAQYRLNSPKEALQTVDSAPELT 331
++CF N F +AL N N +LA+ +L K + +NSPK + + +DSA +L
Sbjct: 460 LICFRAKSNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPKCSEEDLDSAYKLI 519
Query: 332 PALKELRAQILYRLE 376
++ YR+E
Sbjct: 520 CNEYDILKPFQYRIE 534
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 578 TSPALPKCCPSCMPI--RMCFHQTAAAL 501
T+PA +C PSCMP + C QT AA+
Sbjct: 122 TTPAPVQCQPSCMPACEQSCVVQTPAAV 149
>AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine
receptor, class t protein65 protein.
Length = 354
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 257 KAYAQYRLNSPKEALQTVDSAPELTPALKELRAQILYRL 373
K YA++++ + L T+ P++T +LR I Y+L
Sbjct: 59 KVYARFKIFKTYQTLSTLAILPKMTKFPSDLRENISYKL 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,765
Number of Sequences: 27780
Number of extensions: 278651
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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