Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18l11f
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.86 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 338 LKELRAQILYRLEQYQDCYNLYRDLLKNTTD 430
           LKE   +I +++E  +DC   + DLL    +
Sbjct: 516 LKEKENEIDFKIEVTEDCNKSFNDLLTQVAE 546


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 612 SALFKTDKASLYFPRIAKVLPELYANSYV 526
           + L + D  S+ FP + ++LP+ + +S V
Sbjct: 143 AVLTRQDTQSVIFPPVYEILPQHHLDSRV 171


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 65  KFCQSSDYERALKAAG 112
           +FCQ S Y++ L+  G
Sbjct: 76  EFCQDSGYDKILQVLG 91


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 65  KFCQSSDYERALKAAG 112
           +FCQ S Y++ L+  G
Sbjct: 76  EFCQDSGYDKILQVLG 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,246
Number of Sequences: 438
Number of extensions: 3325
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)