Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18l04r
         (874 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040168-1|AAH40168.1|  479|Homo sapiens v-ets erythroblastosis ...    35   0.33 
AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    32   3.1  
AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    32   3.1  
BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetit...    31   7.2  
AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetit...    31   7.2  
AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetit...    31   7.2  
AY605045-1|AAT35812.1|  199|Homo sapiens HCV F-transactivated pr...    30   9.5  

>BC040168-1|AAH40168.1|  479|Homo sapiens v-ets erythroblastosis
           virus E26 oncogene homolog (avian) protein.
          Length = 479

 Score = 35.1 bits (77), Expect = 0.33
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
 Frame = +3

Query: 312 FPHSSFQLVHPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGH 491
           FP++S   V+P  +Q   +  RP L +    RS     GH  PQ +  +   S   +   
Sbjct: 231 FPNTS---VYPEATQR--ITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVPKTED 285

Query: 492 RRPQLEHRGFLRSLQSQPGNRHS-QLELRHFLRSLQNQQGNRRC 620
           +RPQL+    L    S+  N  S Q++L  FL  L +   N  C
Sbjct: 286 QRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSSC 329


>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +3

Query: 405 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 584
           R+    P H RP+  HR   RS +     RRP    R   R +   P +R S+  +R   
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344

Query: 585 RSLQNQQGN 611
           RS  +  G+
Sbjct: 345 RSSASLSGS 353


>AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +3

Query: 405 RS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFL 584
           R+    P H RP+  HR   RS +     RRP    R   R +   P +R S+  +R   
Sbjct: 287 RTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRR 344

Query: 585 RSLQNQQGN 611
           RS  +  G+
Sbjct: 345 RSSASLSGS 353


>BC036187-1|AAH36187.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 405 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 575
           R+    P H RP+  HR   RS   + +P   RRP    R   R +   P +R S+  +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346

Query: 576 HFLRSLQNQQGN 611
              RS  +  G+
Sbjct: 347 RRRRSSASLSGS 358


>AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 405 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 575
           R+    P H RP+  HR   RS   + +P   RRP    R   R +   P +R S+  +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346

Query: 576 HFLRSLQNQQGN 611
              RS  +  G+
Sbjct: 347 RRRRSSASLSGS 358


>AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 405 RS*QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSLQSQPGNRHSQLELR 575
           R+    P H RP+  HR   RS   + +P   RRP    R   R +   P +R S+  +R
Sbjct: 287 RTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVR 346

Query: 576 HFLRSLQNQQGN 611
              RS  +  G+
Sbjct: 347 RRRRSSASLSGS 358


>AY605045-1|AAT35812.1|  199|Homo sapiens HCV F-transactivated
           protein 1 protein.
          Length = 199

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 585 RSLQNQQGNRRCQREFQCQKSQ---RCLHFRSIQSRPRR 692
           R LQN +GN RCQR+ +   ++    CL    I   PRR
Sbjct: 12  RPLQNVEGNNRCQRKAKNYGNKYFIHCLDLEKITLSPRR 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,266,702
Number of Sequences: 237096
Number of extensions: 2423756
Number of successful extensions: 7218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7166
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)