Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18l04r
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    27   0.30 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.5  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +3

Query: 375 RPQLEHRRCLRS*QNQPGHRRP------QLEHRRCLRSLQNQPGHRRP 500
           +P+  H R  R  + +PG+ RP      +  H R  R  + +PG+ RP
Sbjct: 108 QPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 155



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
 Frame = +3

Query: 375 RPQLEHRRCLRS*QNQ--PGHRRP------QLEHRRCLRSLQNQPGHRR------PQLEH 512
           +P+  H R  R  +++  PG+ RP      +  H R  R  + +PG+ R      P+  H
Sbjct: 80  QPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPH 139

Query: 513 RGFLRSLQSQPGN 551
               R  +++PGN
Sbjct: 140 PRLRREPEAEPGN 152


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -2

Query: 723 YIIPDEVIQELALA--GIELSENVDNVAIFDIEIPVDNVDFPVDS 595
           YI P+    E +L   G+E+  N D      + +  DNV  P++S
Sbjct: 153 YIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIES 197


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 525 RSLQSQPGNRHSQLE-LRHFLRSLQNQQGNRRCQRE 629
           RS Q +  + HS+ E LRH  R+     G R C R+
Sbjct: 222 RSFQ-RTSSCHSRYEDLRHEDRNSYRNDGERSCSRD 256


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 73  SFAGVFTLTVLNDGVNYLNRA*VFWFSDIF 162
           +F G+  L VLN   N L       F D+F
Sbjct: 330 TFLGLIRLIVLNLSYNMLTHIDARMFKDLF 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,523
Number of Sequences: 438
Number of extensions: 4897
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)