Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k21f
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.75 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.99 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = -2

Query: 733  WRYQQ-VLXHCTMAFNK-----GSLCFTERILSSCFLSCTA 629
            W Y   V  HCT+   +       +CFT R + SC   CTA
Sbjct: 1677 WGYHHNVNKHCTIHRTQVKETDDKICFTMRPVVSCASGCTA 1717


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = +2

Query: 98  KQYGKLNGYS*ERCYRYP*NKQHA-SGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQTS 274
           +QY KL+    +        K+++ S E  Q     KR            S +   R+ S
Sbjct: 17  RQYEKLHNEKEKFLEERTSRKRYSRSREREQKLYKNKREYRKYRETSKERSRNRTERERS 76

Query: 275 HRPPRLSSGASYISAWITKSNYRQIS*RYSTGHKK 379
             P  +S+  S  + +   +NY   +  Y+T +KK
Sbjct: 77  KEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKK 111


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 508 NNGSSPILQLSTLVGMRREYIQPTRPTHASTASNRRGLTSVPYKTR 645
           +N SSP L L    G+  ++ +     HA+   N + L     + R
Sbjct: 371 SNSSSPSLDLGKEGGLEAQWSRVLGRVHATIERNEKRLAEQDRRER 416


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 251  SWMSRQTSHRPPRLSSGASYI 313
            +W  +Q    PP  SSG +Y+
Sbjct: 1349 AWRQQQPPPPPPPPSSGQAYL 1369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,354
Number of Sequences: 438
Number of extensions: 4763
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)