Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k19f
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    28   1.2  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    26   4.7  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    26   4.7  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    26   4.7  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   8.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.2  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -2

Query: 497 NFQLSFLQINLVLEYSNFLLKTLCLRRSDSP*CLHRYLMH 378
           N++  FL  N+ LE SN+LLK +CL    SP  L R   H
Sbjct: 2   NYRQLFLLQNVNLE-SNYLLKRVCLSLKLSPCKLTRKFHH 40


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 680 LKEWV*YLIDLDQPMEIAALLHHH 609
           L+ W+ Y+  +D+P+E+ + L HH
Sbjct: 120 LRIWMQYVNYIDEPVELFSFLAHH 143


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 11  KSALNCLHKKIIPPLNMSKPEIIINYI 91
           K  LN +HK++IP L   KP ++++++
Sbjct: 248 KQVLNVIHKRVIPFL--QKPNLLMDFL 272


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 80  INYIQKLRHPIKEIRERSLQSLKSKFKL 163
           I+ IQ +R  I+  RE+ L+  ++KFK+
Sbjct: 25  ISNIQDIRAQIQSFREKELEGSQTKFKV 52


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 321 VSCTMYVPDFVFITECSKSKASRCRSGFSSLNHSIKDSNRNLVP 190
           V C  Y P+ VF+  C + K  R     S+   S+   N N+ P
Sbjct: 224 VLCVNYSPNGVFLASCGRDKTIRIWDSTSNKKKSLITIN-NVSP 266


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 146 LMIEESVHESLLLDV*ASECN*L*SQVYSCSRVELFFYANNS 21
           L+I  S+ +   L +  + C  +  + + C RVE FFY +++
Sbjct: 291 LVIPPSLADRESLSILVNYCKSIRFRCFRCRRVEYFFYLDSN 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,109
Number of Sequences: 5004
Number of extensions: 53068
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)