Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k19f
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591...    32   0.40 
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012...    32   0.40 
02_03_0349 + 18010414-18014283                                         30   2.1  
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541...    29   2.8  
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    28   6.4  

>03_06_0327 -
           33158131-33158315,33158586-33158639,33159149-33159180,
           33159275-33159369,33159466-33159539,33159643-33159778,
           33159874-33159937,33160017-33160079,33160160-33160299,
           33160487-33160627,33160747-33160868,33160947-33161112,
           33161194-33161313,33161580-33161651,33161787-33161843,
           33162036-33162152,33162231-33162369,33162794-33162900,
           33162972-33163081,33163172-33163305,33163397-33163546,
           33163635-33163840,33166123-33166818
          Length = 1059

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 366 LSLNFCIFVTKLFKPVSCTMYVPDFVFITECSKSKASRCR 247
           LSLN  I  T  FKPV+   +V +F+ I + S+  + R R
Sbjct: 391 LSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDRDR 430


>03_06_0243 +
           32598782-32598793,32599037-32599123,32601052-32601257,
           32601342-32601453,32601628-32601724,32601815-32601924,
           32601996-32602153,32602559-32602697,32602776-32602892,
           32603084-32603140,32603280-32603351,32603617-32603736,
           32603818-32603983,32604067-32604188,32604373-32604447,
           32604636-32604775,32604860-32604922,32605002-32605065,
           32605161-32605296,32605401-32605474,32605570-32605664,
           32605761-32605792,32606344-32606474,32606595-32606827,
           32606916-32607723,32607815-32607967
          Length = 1192

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 366 LSLNFCIFVTKLFKPVSCTMYVPDFVFITECSKSKASRCR 247
           LSLN  I  T  FKPV+   +V +F+ I + S+  + R R
Sbjct: 167 LSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDRDR 206


>02_03_0349 + 18010414-18014283
          Length = 1289

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -1

Query: 399  SS*IFNASLSILSLNFCIFVTKLFKPVSCTMYVPDFVFITECS 271
            SS +FN SLS L ++ C ++T L+    C++Y  + + I +C+
Sbjct: 953  SSSMFNLSLSKLMISNCPYITTLWH--GCSLYALEELSIQQCA 993


>01_06_0561 +
           30251547-30252173,30252248-30252405,30253250-30254192,
           30254271-30254438,30254546-30254857,30255498-30255557,
           30255905-30255937,30256083-30256271
          Length = 829

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 8   KKSALNCLHKKIIPPLNMSKPEIIINYIQKLRHPIKEIRERSLQSLKSKF 157
           K  A+  L  +++PP  + K     ++ Q L HP+ E R +    L+S+F
Sbjct: 220 KMRAMANLRHRVLPPQLLLKWPKEASFCQLLMHPVPETRPKMSDVLQSEF 269


>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
            1279204-1279336,1279425-1279551,1279788-1280284,
            1280578-1280642,1280722-1280823,1281020-1281162,
            1281761-1281816,1282214-1282869,1282975-1283165,
            1283280-1283574,1283738-1283778,1284082-1284104,
            1284173-1284369,1284472-1284581,1285309-1285639,
            1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +2

Query: 29   LHKKIIPPLNMSKPEIIINYIQKLRHPIKEIRERSLQSLKSKFKLGWEFDD---EISGTR 199
            LH + +PPL +S P I    IQK    + E  + S+++ K + ++ W+  +   + SG R
Sbjct: 1715 LHIETVPPLRLSPPAIYHEKIQKRTTTMGESSKHSVRTEKPQ-RI-WQMKEPRSKRSGNR 1772

Query: 200  FLLESLM 220
             L +S M
Sbjct: 1773 VLPKSSM 1779


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,592
Number of Sequences: 37544
Number of extensions: 281784
Number of successful extensions: 744
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)