Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k19f
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.71 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.8  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 218 MEWFNDEKPLLQREALDLLHSVIKTKSGTY 307
           + W  D KPL   EA+  + SV K   G Y
Sbjct: 339 VSWLKDGKPLGLEEAVLRIESVKKEDKGMY 368


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 273 SKSKASRCRSGFSSLNHSIKDSNRN 199
           S  + S C S +  L H  ++S RN
Sbjct: 223 SFQRTSSCHSRYEDLRHEDRNSYRN 247


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 118 LFYWMSKLLNVINYNLRFTHVQGWNYFFMQTIQRTF 11
           L YW   L NVI    R+   Q  N+ F    ++ F
Sbjct: 70  LSYWRGNLANVI----RYFPTQALNFAFKDKYKQVF 101


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 118 LFYWMSKLLNVINYNLRFTHVQGWNYFFMQTIQRTF 11
           L YW   L NVI    R+   Q  N+ F    ++ F
Sbjct: 70  LSYWRGNLANVI----RYFPTQALNFAFKDKYKQVF 101


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 2   IFKKSALNC-LHKKIIPPLNMSKPEIIIN 85
           +F K  +   L K IIP L ++  E +IN
Sbjct: 590 VFAKGDMEAFLVKNIIPKLQIALSEFVIN 618


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 152 KFKLGWEFDDE 184
           KFKLG EF++E
Sbjct: 64  KFKLGEEFEEE 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,303
Number of Sequences: 438
Number of extensions: 3414
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)