Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k16r
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.53 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.53 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.93 

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 655 GHMPGVARGTESARRQQRD--KETVQFDVGIILARDKTRRFRTTFHAHFSGQLVD 497
           GH   + +  +S+RRQ R+  K+  ++     L R+  +R    F   + G+  D
Sbjct: 372 GHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHRYQGKFFD 426


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 655 GHMPGVARGTESARRQQRD--KETVQFDVGIILARDKTRRFRTTFHAHFSGQLVD 497
           GH   + +  +S+RRQ R+  K+  ++     L R+  +R    F   + G+  D
Sbjct: 340 GHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHRYQGKFFD 394


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -2

Query: 646 PGVARGTESARRQQRDKETVQFDVGIILARDKTRRF 539
           PG+   T +A     D++    D  ++++ DK+  F
Sbjct: 422 PGMEEPTNTASGSNEDEDETPLDPVVVISNDKSTEF 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,920
Number of Sequences: 438
Number of extensions: 4848
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)