Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k16f
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    35   0.014
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   3.8  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    26   5.0  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   6.6  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   6.6  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    25   8.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.7  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    25   8.7  

>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +3

Query: 357 LPGGEKTLIRQVSNLNEKVKNRLEQLDD 440
           +PGGE T I ++ N++EK+++RLE L D
Sbjct: 65  IPGGESTTIGKLINIDEKLRDRLEHLVD 92


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 381 IRQVSNLNEKVKNRLEQLDDF--DDDSVRKTMGLSQQEFVTKINMLNDEIK 527
           IR++  L E+ KN+ EQL     D D  R  + + Q++   +I     ++K
Sbjct: 26  IREIRELQERNKNKYEQLLQARKDLDRFRSNLNVQQEQLQNEILGFKQDVK 76


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 378 LIRQVSNLNEKVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINML 512
           LI+ +S  + ++ N  E   DF++ SV K +GL   E + K+  L
Sbjct: 823 LIKSLSQNSAEILNPAEL--DFEETSVSKHLGLYIDEMIKKLTAL 865


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 607 TLTSDSSLEHWIPILKALTLCSDSHAFLISSF 512
           T + + S+EHW+P+    TL  D++ ++ S F
Sbjct: 315 TQSFNDSMEHWVPVCFP-TLNPDAYIYIYSYF 345


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 477  SQQEFVTKINMLNDEIKKAWESEQRV 554
            +Q E +TK+ +    +K AWES Q++
Sbjct: 1098 TQDEVLTKLPVDQASLKAAWESSQKL 1123


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/54 (20%), Positives = 28/54 (51%)
 Frame = +3

Query: 450 DSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQRVKAFKIGIQCSKLLSDVNVM 611
           D+V +  G +  + +  I +L  ++  ++  E  +    IG+ C K++ + N++
Sbjct: 181 DAVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANIL 234


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 376 PS*DRFQI*TKKLKIDWSNWMILMMIQ*GKQW 471
           PS  RF+  +  +  DW +W I+ +I  G  W
Sbjct: 53  PSYPRFENTSNFVSRDWRDWFIMGVISTGFAW 84


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 96   HHPLKTNHVLFKKISNKGFIDDLSKWS--AGFEEIDPLLKFEQ 218
            +HP  + HVLF  +SN   I++L   S     ++I  LLK  Q
Sbjct: 2332 NHPYHSLHVLFSLVSNVPEIENLDAGSRYRAVKKILDLLKVNQ 2374


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 691 SQSLSKTKLPNVSRISVMRMNLLG*KCMTLTSDSSLEHWIPIL 563
           SQ+L+K K+ +V   SV+  ++    C T T  ++++H  P L
Sbjct: 101 SQALTKYKITDVVMDSVIISSMGNVMCETPTIPATIQHLFPHL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,855
Number of Sequences: 5004
Number of extensions: 66877
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)