Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18k16f
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 31 0.74
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658... 30 2.2
11_01_0784 - 6557776-6557802,6557909-6557969,6558270-6558336,656... 29 3.9
07_01_0123 - 927691-929223,930050-930268 29 3.9
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 29 3.9
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 28 6.9
05_05_0324 + 24101583-24101782,24102015-24102162,24103219-241033... 28 6.9
>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 129 KKISNKGFIDDLSKWSAGFEEIDPLLKFEQMALDEDLVHADDEGIGVNYAKEWNTKRTIV 308
+K+ NKG+ ++L KW++ F D K + + L+ +DE + +N+ N ++
Sbjct: 1256 EKMDNKGWNNNLLKWASSFISGDSSSKKKDEKI--SLIEIEDEMVSLNFEYCINLNACLM 1313
Query: 309 LNRYTT--GEKLTIVS 350
++ T GE + I S
Sbjct: 1314 MDLKATRQGETINIFS 1329
>11_01_0787 +
6578158-6579287,6579439-6580870,6581087-6581097,
6581525-6582125,6583981-6585054,6585745-6585873,
6585925-6585963
Length = 1471
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 396 NLNEKVKNRLEQLDDFDDDSVRKTMGLS-QQEFVTKINM--LNDEIKKAWESEQRVKAFK 566
+L K+ ++ L D D+ + M L+ + KI+M L DE+ K W E R A++
Sbjct: 23 DLLAKLSEKVNNLRDLDEKIEQMRMQLATMNNVIWKISMTCLTDEVVKGWIGEVRKVAYR 82
Query: 567 I 569
+
Sbjct: 83 V 83
>11_01_0784 -
6557776-6557802,6557909-6557969,6558270-6558336,
6560630-6563309
Length = 944
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 390 VSNLNEKVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQRVKAFKI 569
++ L+EKV N L+ LD+ + ++ ++ L DE+ K W E R A+++
Sbjct: 25 IAKLSEKVNN-LKDLDEKIEQMRKQLTTMNNVILQIGTTYLTDEVVKGWIGEVRKVAYRV 83
>07_01_0123 - 927691-929223,930050-930268
Length = 583
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 324 TGEKLTIVSSFLPG--GEKTLIRQVSNLNEKVKNRLEQLDDFDDDSV 458
+ E L ++ PG G+ TLI +E+V+NR Q+ F+DD V
Sbjct: 266 SAENLGVLPIIGPGKVGKSTLIEHACE-DERVRNRFSQIVCFNDDDV 311
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 480 QQEFVTKINMLNDEIKKAWESEQRVKAFKIGIQC 581
Q EF ++DE KKA EQ++K G QC
Sbjct: 714 QYEFEIVKKRMDDEAKKASRLEQKIKLLTQGYQC 747
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 369 EKTLI-RQVSNLNEKVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESE 545
EKT+ + + EK K+R + D DDD GL + + M ++EIK +
Sbjct: 526 EKTVWEKHQEKMKEKRKSRKRRSKDDDDDGYSSEDGLDEHDDFFDDEMSDEEIKP--NKK 583
Query: 546 QRVKA 560
Q+ KA
Sbjct: 584 QKAKA 588
>05_05_0324 +
24101583-24101782,24102015-24102162,24103219-24103314,
24103436-24103720
Length = 242
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 432 LDDFDDDSVRKTMGLSQQEFVTKINMLNDEI 524
L+D DDD+ RKT+ LS + T+I + ++++
Sbjct: 74 LNDADDDAARKTIKLSSMQKKTQIKLDSEKM 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,667,576
Number of Sequences: 37544
Number of extensions: 362813
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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