Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18k16f
(747 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537867-1|CAD97869.1| 972|Homo sapiens hypothetical protein pr... 150 5e-36
BC050464-1|AAH50464.1| 963|Homo sapiens esophageal cancer assoc... 150 5e-36
BC058845-1|AAH58845.1| 963|Homo sapiens esophageal cancer assoc... 150 6e-36
BC014900-1|AAH14900.2| 869|Homo sapiens MGC16824 protein protein. 150 6e-36
AK024693-1|BAB14965.1| 824|Homo sapiens protein ( Homo sapiens ... 131 3e-30
AF461052-1|AAL67806.2| 813|Homo sapiens esophageal cancer assoc... 71 6e-12
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 34 0.62
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 34 0.62
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 34 0.62
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 34 0.62
M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. 34 0.62
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 34 0.62
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 34 0.62
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 34 0.62
>BX537867-1|CAD97869.1| 972|Homo sapiens hypothetical protein
protein.
Length = 972
Score = 150 bits (364), Expect = 5e-36
Identities = 102/261 (39%), Positives = 142/261 (54%), Gaps = 30/261 (11%)
Frame = +3
Query: 24 MPTFEWKSKNQKRMI----CK--ALKFEVS-HHPLKTNHVL---FKKISNKGFIDDLSKW 173
M F W S+N+ C+ A+ E +HPLK V KK++ KG S
Sbjct: 10 MAVFPWHSRNRNYKAEFASCRLEAVPLEFGDYHPLKPITVTESKTKKVNRKGSTSSTSSS 69
Query: 174 SAG---------FEEIDPLLKFEQMALDEDLVHA----------DDEGIGVNYAKEWNTK 296
S+ + DPL F A L A DD + + + W K
Sbjct: 70 SSSSVVDPLSSVLDGTDPLSMFAATADPAALAAAMDSSRRKRDRDDNSVVGSDFEPWTNK 129
Query: 297 RTIVLNRYTTGEKLTIVSSFLPGGEKTLIRQVS-NLNEKVKNRLEQLDDFDDDSVRKTMG 473
R +L RYTT EKL+I + G EK + ++EKV+ RLE+LDDF++ S ++ +
Sbjct: 130 RGEILARYTTTEKLSI--NLFMGSEKGKAGTATLAMSEKVRTRLEELDDFEEGSQKELLN 187
Query: 474 LSQQEFVTKINMLNDEIKKAWESEQRVKAFKIGIQCSKLLSDVNVMHFYPSKFILITDIL 653
L+QQ++V +I LN +K AW S+Q+VKA KI IQCSKLLSD +V+ FYPSKF+LITDIL
Sbjct: 188 LTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDIL 247
Query: 654 DTFGNLVFDRLCEKKVLGKSL 716
DTFG LV++R+ V +S+
Sbjct: 248 DTFGKLVYERIFSMCVDSRSV 268
>BC050464-1|AAH50464.1| 963|Homo sapiens esophageal cancer
associated protein protein.
Length = 963
Score = 150 bits (364), Expect = 5e-36
Identities = 102/261 (39%), Positives = 142/261 (54%), Gaps = 30/261 (11%)
Frame = +3
Query: 24 MPTFEWKSKNQKRMI----CK--ALKFEVS-HHPLKTNHVL---FKKISNKGFIDDLSKW 173
M F W S+N+ C+ A+ E +HPLK V KK++ KG S
Sbjct: 1 MAVFPWHSRNRNYKAEFASCRLEAVPLEFGDYHPLKPITVTESKTKKVNRKGSTSSTSSS 60
Query: 174 SAG---------FEEIDPLLKFEQMALDEDLVHA----------DDEGIGVNYAKEWNTK 296
S+ + DPL F A L A DD + + + W K
Sbjct: 61 SSSSVVDPLSSVLDGTDPLSMFAATADPAALAAAMDSSRRKRDRDDNSVVGSDFEPWTNK 120
Query: 297 RTIVLNRYTTGEKLTIVSSFLPGGEKTLIRQVS-NLNEKVKNRLEQLDDFDDDSVRKTMG 473
R +L RYTT EKL+I + G EK + ++EKV+ RLE+LDDF++ S ++ +
Sbjct: 121 RGEILARYTTTEKLSI--NLFMGSEKGKAGTATLAMSEKVRTRLEELDDFEEGSQKELLN 178
Query: 474 LSQQEFVTKINMLNDEIKKAWESEQRVKAFKIGIQCSKLLSDVNVMHFYPSKFILITDIL 653
L+QQ++V +I LN +K AW S+Q+VKA KI IQCSKLLSD +V+ FYPSKF+LITDIL
Sbjct: 179 LTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTSVIQFYPSKFVLITDIL 238
Query: 654 DTFGNLVFDRLCEKKVLGKSL 716
DTFG LV++R+ V +S+
Sbjct: 239 DTFGKLVYERIFSMCVDSRSV 259
>BC058845-1|AAH58845.1| 963|Homo sapiens esophageal cancer
associated protein protein.
Length = 963
Score = 150 bits (363), Expect = 6e-36
Identities = 76/157 (48%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
Frame = +3
Query: 249 DDEGIGVNYAKEWNTKRTIVLNRYTTGEKLTIVSSFLPGGEKTLIRQVS-NLNEKVKNRL 425
DD + + + W KR +L RYTT EKL+I + G EK + ++EKV+ RL
Sbjct: 105 DDNSVVGSDFEPWTNKRGEILARYTTTEKLSI--NLFMGSEKGKAGTATLAMSEKVRTRL 162
Query: 426 EQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQRVKAFKIGIQCSKLLSDVN 605
E+LDDF++ S ++ + L+QQ++V +I LN +K AW S+Q+VKA KI IQCSKLLSD +
Sbjct: 163 EELDDFEEGSQKELLNLTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTS 222
Query: 606 VMHFYPSKFILITDILDTFGNLVFDRLCEKKVLGKSL 716
V+ FYPSKF+LITDILDTFG LV++R+ V +S+
Sbjct: 223 VIQFYPSKFVLITDILDTFGKLVYERIFSMCVDSRSV 259
>BC014900-1|AAH14900.2| 869|Homo sapiens MGC16824 protein protein.
Length = 869
Score = 150 bits (363), Expect = 6e-36
Identities = 76/157 (48%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
Frame = +3
Query: 249 DDEGIGVNYAKEWNTKRTIVLNRYTTGEKLTIVSSFLPGGEKTLIRQVS-NLNEKVKNRL 425
DD + + + W KR +L RYTT EKL+I + G EK + ++EKV+ RL
Sbjct: 11 DDNSVVGSDFEPWTNKRGEILARYTTTEKLSI--NLFMGSEKGKAGTATLAMSEKVRTRL 68
Query: 426 EQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQRVKAFKIGIQCSKLLSDVN 605
E+LDDF++ S ++ + L+QQ++V +I LN +K AW S+Q+VKA KI IQCSKLLSD +
Sbjct: 69 EELDDFEEGSQKELLNLTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQCSKLLSDTS 128
Query: 606 VMHFYPSKFILITDILDTFGNLVFDRLCEKKVLGKSL 716
V+ FYPSKF+LITDILDTFG LV++R+ V +S+
Sbjct: 129 VIQFYPSKFVLITDILDTFGKLVYERIFSMCVDSRSV 165
>AK024693-1|BAB14965.1| 824|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21040 fis, clone CAE10642. ).
Length = 824
Score = 131 bits (316), Expect = 3e-30
Identities = 59/106 (55%), Positives = 83/106 (78%)
Frame = +3
Query: 399 LNEKVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQRVKAFKIGIQ 578
++EKV+ RLE+LDDF++ S ++ + L+QQ++V +I LN +K AW S+Q+VKA KI IQ
Sbjct: 15 MSEKVRTRLEELDDFEEGSQKELLNLTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQ 74
Query: 579 CSKLLSDVNVMHFYPSKFILITDILDTFGNLVFDRLCEKKVLGKSL 716
CSKLLSD +V+ FYPSKF+LITDILDTFG LV++R+ V +S+
Sbjct: 75 CSKLLSDTSVIQFYPSKFVLITDILDTFGKLVYERIFSMCVDSRSV 120
>AF461052-1|AAL67806.2| 813|Homo sapiens esophageal cancer
associated protein protein.
Length = 813
Score = 70.5 bits (165), Expect = 6e-12
Identities = 30/60 (50%), Positives = 46/60 (76%)
Frame = +3
Query: 399 LNEKVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQRVKAFKIGIQ 578
++EKV+ RLE+LDDF++ S ++ + L+QQ++V +I LN +K AW S+Q+VKA KI IQ
Sbjct: 32 MSEKVRTRLEELDDFEEGSQKELLNLTQQDYVNRIEELNQSLKDAWASDQKVKALKIVIQ 91
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 33.9 bits (74), Expect = 0.62
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 372 KTLIRQVSNLNE--KVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWES 542
K I+++SN+ + K+K+ E+L F DD+V+K LS + F+ +N D + K +S
Sbjct: 2368 KETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKS 2426
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 33.9 bits (74), Expect = 0.62
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 372 KTLIRQVSNLNE--KVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWES 542
K I+++SN+ + K+K+ E+L F DD+V+K LS + F+ +N D + K +S
Sbjct: 2371 KETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKS 2429
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 33.9 bits (74), Expect = 0.62
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 372 KTLIRQVSNLNE--KVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWES 542
K I+++SN+ + K+K+ E+L F DD+V+K LS + F+ +N D + K +S
Sbjct: 2371 KETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKS 2429
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 33.9 bits (74), Expect = 0.62
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 372 KTLIRQVSNLNE--KVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWES 542
K I+++SN+ + K+K+ E+L F DD+V+K LS + F+ +N D + K +S
Sbjct: 1090 KETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKS 1148
>M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.
Length = 4563
Score = 33.9 bits (74), Expect = 0.62
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 372 KTLIRQVSNLNE--KVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWES 542
K I+++SN+ + K+K+ E+L F DD+V+K LS + F+ +N D + K +S
Sbjct: 2371 KETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKS 2429
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 33.9 bits (74), Expect = 0.62
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 372 KTLIRQVSNLNE--KVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWES 542
K I+++SN+ + K+K+ E+L F DD+V+K LS + F+ +N D + K +S
Sbjct: 2371 KETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKS 2429
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 33.9 bits (74), Expect = 0.62
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 372 KTLIRQVSNLNE--KVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWES 542
K I+++SN+ + K+K+ E+L F DD+V+K LS + F+ +N D + K +S
Sbjct: 2371 KETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKS 2429
>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
Length = 3929
Score = 33.9 bits (74), Expect = 0.62
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 372 KTLIRQVSNLNE--KVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWES 542
K I+++SN+ + K+K+ E+L F DD+V+K LS + F+ +N D + K +S
Sbjct: 2371 KETIQKLSNVLQQVKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDMLIKKLKS 2429
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,889,534
Number of Sequences: 237096
Number of extensions: 2128279
Number of successful extensions: 3924
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3918
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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