Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k16f
         (747 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052143-1|AAK93567.1|  942|Drosophila melanogaster SD10311p pro...   145   6e-35
AE014297-804|AAF54281.3|  942|Drosophila melanogaster CG8202-PA ...   145   6e-35
AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like...    29   6.7  

>AY052143-1|AAK93567.1|  942|Drosophila melanogaster SD10311p
           protein.
          Length = 942

 Score =  145 bits (351), Expect = 6e-35
 Identities = 81/190 (42%), Positives = 121/190 (63%), Gaps = 10/190 (5%)
 Frame = +3

Query: 156 DDLSKWSAGFEEI-DPLLKFEQMALDEDLV---HADDEGIGVNYAKEWNTKRTIVLNRYT 323
           D LS+++   +E+ DPL    QM  + DL       D     +   +W+++R  +LNR+T
Sbjct: 51  DPLSQFARQDDELNDPL---SQMVSEFDLKSKRRERDRTEPEDNTLQWSSRRLGILNRFT 107

Query: 324 TGEKLTIVSSFL------PGGEKTLIRQVSNLNEKVKNRLEQLDDFDDDSVRKTMGLSQQ 485
           T EKL++ +SFL       GG +++  Q   + +K K RLEQLD FDD S+R  M L+QQ
Sbjct: 108 TNEKLSLSTSFLVSSGSLDGGNESIKAQTV-VADKTKFRLEQLDHFDDGSMRHMMDLTQQ 166

Query: 486 EFVTKINMLNDEIKKAWESEQRVKAFKIGIQCSKLLSDVNVMHFYPSKFILITDILDTFG 665
           E++ +   L  E+ ++W ++QRVKA KI IQC+K+L+D  V+ FYPS+++LITDILD FG
Sbjct: 167 EYIQRFEQLKQELIQSWHNDQRVKALKIAIQCAKMLADTTVLQFYPSQYVLITDILDVFG 226

Query: 666 NLVFDRLCEK 695
            LV++RL  K
Sbjct: 227 KLVYERLRAK 236


>AE014297-804|AAF54281.3|  942|Drosophila melanogaster CG8202-PA
           protein.
          Length = 942

 Score =  145 bits (351), Expect = 6e-35
 Identities = 81/190 (42%), Positives = 121/190 (63%), Gaps = 10/190 (5%)
 Frame = +3

Query: 156 DDLSKWSAGFEEI-DPLLKFEQMALDEDLV---HADDEGIGVNYAKEWNTKRTIVLNRYT 323
           D LS+++   +E+ DPL    QM  + DL       D     +   +W+++R  +LNR+T
Sbjct: 51  DPLSQFARQDDELNDPL---SQMVSEFDLKSKRRERDRTEPEDNTLQWSSRRLGILNRFT 107

Query: 324 TGEKLTIVSSFL------PGGEKTLIRQVSNLNEKVKNRLEQLDDFDDDSVRKTMGLSQQ 485
           T EKL++ +SFL       GG +++  Q   + +K K RLEQLD FDD S+R  M L+QQ
Sbjct: 108 TNEKLSLSTSFLVSSGSLDGGNESIKAQTV-VADKTKFRLEQLDHFDDGSMRHMMDLTQQ 166

Query: 486 EFVTKINMLNDEIKKAWESEQRVKAFKIGIQCSKLLSDVNVMHFYPSKFILITDILDTFG 665
           E++ +   L  E+ ++W ++QRVKA KI IQC+K+L+D  V+ FYPS+++LITDILD FG
Sbjct: 167 EYIQRFEQLKQELIQSWHNDQRVKALKIAIQCAKMLADTTVLQFYPSQYVLITDILDVFG 226

Query: 666 NLVFDRLCEK 695
            LV++RL  K
Sbjct: 227 KLVYERLRAK 236


>AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like
            kinetochore motorprotein CENP-meta protein.
          Length = 2244

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
 Frame = +3

Query: 75   ALKFEVSHHPLKTNHVLFKKISNKGFIDDLSKWSAGFEEIDPLLKFEQM-ALDEDLVHAD 251
            ALK E+ HHPLK  +        K  I++  K  A  E+    +K + + A   DL  A 
Sbjct: 2025 ALKMELDHHPLKDENAQL----TKRVIEEQDK--AKVEQKRLKMKLQDLNARINDLTTAS 2078

Query: 252  DEGIGVNYAKEWNTKRTIVLNRYTTGEKLTIVSSFLPGGEKT--LIRQVSNLNEKVKNRL 425
             +    N   +     T+     T  +  TI+       E+   ++R   NL +++K +L
Sbjct: 2079 AKEPESNQMAQAAKPATVAAQTQTESDLETILEKTNVKYEEAVRMLRYRYNLIQELKEKL 2138

Query: 426  EQLDDFDDDSV 458
             Q ++ D  ++
Sbjct: 2139 RQNENSDTSNI 2149


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,324,585
Number of Sequences: 53049
Number of extensions: 657953
Number of successful extensions: 1637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)