Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k16f
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.57 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   4.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   7.0  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 299 TFCIPFFCIIYPYTLIVS 246
           ++CIP   IIY Y+ IVS
Sbjct: 219 SYCIPMILIIYYYSQIVS 236


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 692 KKSFGQKLVKPVQDINPE 745
           K+SFG  L KP+ D N E
Sbjct: 644 KRSFGFPLDKPLYDFNYE 661


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 692 KKSFGQKLVKPVQDINPE 745
           K+SFG  L KP+ D N E
Sbjct: 644 KRSFGFPLDKPLYDFNYE 661


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 288 NTKRTIVLNRYTTGEKLTIVSSFLPGGEKT 377
           NTK  ++  R    E +  V+ F PGG+KT
Sbjct: 224 NTKAAVM--RLGLMEIIKFVNIFFPGGKKT 251


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 627 KFILITDILDTF 662
           KF+L T ILDTF
Sbjct: 305 KFVLFTMILDTF 316


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 423 LEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQ 548
           +EQ  D  D ++  +  +   E  TK N   D+I +   +E+
Sbjct: 1   MEQFHDMSDGNIHMSDVIEVIETDTKYNGREDQIPREMNTER 42


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 423 LEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQ 548
           +EQ  D  D ++  +  +   E  TK N   D+I +   +E+
Sbjct: 1   MEQFHDMSDGNIHMSDVIEVIETDTKYNGREDQIPREMNTER 42


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 318 YTTGEKLTIVSSFLP 362
           ++TGE+  I S+FLP
Sbjct: 142 FSTGERCRISSNFLP 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,517
Number of Sequences: 438
Number of extensions: 4404
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)