Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k14f
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283...    29   3.9  
09_02_0315 - 7179332-7179949                                           28   6.8  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    28   6.8  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    27   9.0  

>06_01_0393 +
           2831676-2831876,2831986-2832101,2832340-2832421,
           2832515-2832671,2832755-2832848,2833942-2834008,
           2834464-2835009
          Length = 420

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 162 PSANRSRWCAMGICT 206
           PS NRS+ CA GICT
Sbjct: 70  PSLNRSKCCAKGICT 84


>09_02_0315 - 7179332-7179949
          Length = 205

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 119 LLLPHPQCNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVECGD 259
           L+ P P+   +  C++G        GN   NLK +  +WPE   C D
Sbjct: 93  LIEPGPERVAWVLCSWGYE------GNYLANLKLFDTEWPEAAACQD 133


>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
            14050145-14050272,14050409-14050502,14050749-14051237,
            14052622-14052915,14053602-14053732,14053829-14055440,
            14055539-14055651,14055902-14056933,14057023-14057145,
            14057250-14057688
          Length = 1656

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 186  CAMGICTSILKLGSATGPK 242
            CA+G CTS++K G + G K
Sbjct: 1582 CAVGSCTSVMKNGKSEGSK 1600


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -1

Query: 135 G*GKSNSISQFSDCSGGHRFSARAKATAANININPLIVEIKN 10
           G GKSNS+S  S    G +FS    A  +  N N L  E  N
Sbjct: 798 GQGKSNSVSSQSTLLSGSQFSNSLSAQTSTSNSNLLSSEKVN 839


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,321,142
Number of Sequences: 37544
Number of extensions: 165253
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)