Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k14f
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    38   0.004
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    38   0.004
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    34   0.093
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    33   0.12 
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    33   0.12 
Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.     30   1.5  
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    28   4.6  

>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 140  CNKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV 247
            C  FY+C +G+ V M C     FN     CDWP  V
Sbjct: 1258 CEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAV 1293


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 83  CPPEQSENWEIELLLPHPQC-NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-ECG 256
           C     E  E +  +   +C N F+ C+ G      C  NL FN     CDWP+NV +C 
Sbjct: 171 CSQVSGEYCESDGNISKSECSNVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNVMDCS 230

Query: 257 DR 262
           ++
Sbjct: 231 EK 232



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 143 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 253
           + F  CT G P+ M C   L F+ K   CD+  NV EC
Sbjct: 253 SSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDEC 290


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 149 FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV 247
           FY C  GQ V   C  NL FN    +CD+  NV
Sbjct: 591 FYICANGQVVATTCPANLIFNPYVGECDYSTNV 623



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 140 CNK-FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVE 250
           C K F+ C  G+     C G+L FN  T  CD+ EN E
Sbjct: 446 CTKSFFTCHDGRAFANDCPGDLVFNKATGTCDFAENCE 483


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 137 QCNK-FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 253
           QC+  F  CT G+ + M C   L F+  T +CD+  NV EC
Sbjct: 319 QCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSEC 359



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 128 PHPQCN-KFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 253
           P+  C+  F  C+ G    M C  +L FN     CDWP +V EC
Sbjct: 256 PNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 137 QCNK-FYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 253
           QC+  F  CT G+ + M C   L F+  T +CD+  NV EC
Sbjct: 319 QCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSEC 359



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 128 PHPQCN-KFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENV-EC 253
           P+  C+  F  C+ G    M C  +L FN     CDWP +V EC
Sbjct: 256 PNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299


>Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical
           protein F55B12.3b protein.
          Length = 585

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 143 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 253
           N+ Y   F     +VC G+L  +++ W    PE  EC
Sbjct: 417 NRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQEC 453


>Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical
           protein F55B12.3a protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 143 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 253
           N+ Y   F     +VC G+L  +++ W    PE  EC
Sbjct: 419 NRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQEC 455


>AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 143 NKFYKCTFGQPVEMVCYGNLYFNLKTWQCDWPENVEC 253
           N+ Y   F     +VC G+L  +++ W    PE  EC
Sbjct: 419 NRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQEC 455


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 131 HPQCNKFYKCTFGQPVEMVCYGNLYFNLKTWQC 229
           H   NKF+KC  G+ + + C  N +++  T  C
Sbjct: 29  HFDSNKFWKCEGGRWIVVTCQINYFYDATTGFC 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,810,469
Number of Sequences: 27780
Number of extensions: 141863
Number of successful extensions: 371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)