Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18k11f
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    39   0.002
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.27 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.46 
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    31   0.46 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   0.61 
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   1.4  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   1.4  
U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin ...    27   10.0 

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
 Frame = +2

Query: 137 GWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNT 316
           GWG+T++G S+S   L ++ + + +   C        R+   +  CAG    G  D    
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQG 239

Query: 317 DLGAPAFFQN----ALVGIVSFGKSNANDIYPVVLTSISSFTEWI 439
           D G P          L G+VS+G   A    P V  ++ S + WI
Sbjct: 240 DSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 25  CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 126
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 49  CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 180
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +2

Query: 269 FCAGLVRAGGRDYDNTDLGAPAFFQN-----ALVGIVSFGKSNANDIYPVVLTSISSFTE 433
           FCAG +  GG D    D G P   +       L G++S+G   A    P + T ++ +  
Sbjct: 196 FCAGYLE-GGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLS 254

Query: 434 WI 439
           WI
Sbjct: 255 WI 256


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 25   CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 120
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 332 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 228
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 332 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 228
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin
           protein 5 protein.
          Length = 419

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 143 GTTVQGGSVSDGNLHKLELIVTNKENCREQYKGH 244
           G  + G   SD      EL  T+ +NC   Y GH
Sbjct: 133 GKWLNGNCESDPRAFVCELPATHADNCTYNYNGH 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,844,081
Number of Sequences: 27780
Number of extensions: 266123
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)