Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18j23r
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.85 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.85 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.6  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   6.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   7.9  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   7.9  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 304 TSISTELYNHHYNLSTHYNISIVHSTEL---IPLFAGPF 411
           ++IS    N++YN   +YNI+ +    +   +P++ G F
Sbjct: 91  SNISNYNNNNNYNKKLYYNINYIEQIPVPVPVPIYCGNF 129


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 304 TSISTELYNHHYNLSTHYNISIVHSTEL---IPLFAGPF 411
           ++IS    N++YN   +YNI+ +    +   +P++ G F
Sbjct: 329 SNISNYNNNNNYNKKLYYNINYIEQIPVPVPVPIYCGNF 367


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +1

Query: 265 RVRRAHGKVDLGTTSISTE-LYNHHYNLSTHYNISIVHSTEL---IPLFAGPF 411
           R+ R   +     +S+S   ++N++YN   +YNI  +    +   +P+  G F
Sbjct: 303 RIERERSREPKIISSLSNNTIHNNNYNKKLYYNIINIEQIPVPVPVPIHCGNF 355


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 551 LSLIQKNNATITTIVSIVQNCLRHL---YVAQKIQG 649
           LS+I   +  +T  +SI  NC RH+   ++ +KI G
Sbjct: 12  LSVILITSYFVTPTMSIKCNCKRHVIKPHICRKICG 47


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 32  YNLQTRPPEGRLRQLSLSTSHPNS 103
           Y  Q RPP  RLR+ + S + P +
Sbjct: 77  YIPQPRPPHPRLRREAESEAEPGN 100


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 769 KYLNVSHSLCNL*FDAKRRATG 704
           K+L+++HS C +   A+RR  G
Sbjct: 72  KWLSINHSACAIRCLAQRRKGG 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,330
Number of Sequences: 438
Number of extensions: 5007
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)