Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18j23f
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 29 0.84
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 28 1.5
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 27 2.6
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 3.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 4.5
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 4.5
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 4.5
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 26 5.9
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 26 5.9
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 26 5.9
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.9
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.9
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 7.9
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 7.9
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 28.7 bits (61), Expect = 0.84
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -3
Query: 291 KFTNYRLFCSINYKQKYLSVSNTEL--NKH*KIYTIHTISKQNDHKYNYYMYTELFTMYN 118
++ NY + C I + + +K + I T+++ D K Y++ T +
Sbjct: 1931 EWANYFMLCLIRHATRDSPAKQAPQFQSKSPECVIISTMNRSCDSKCRYFLLTAIANQLR 1990
Query: 117 FTKNPVYAIGCCRYFL 70
+ + Y CC +L
Sbjct: 1991 YPSSHTYYASCCFLYL 2006
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Frame = -3
Query: 321 FIRYYISTTPKFTNYRLFCSINYKQKYLSVSN---------TELNKH*KIYTIHTISKQN 169
F+ + I T FC +N Q Y+S S + +K+ KI ++ Q
Sbjct: 505 FVGFSILTAATIHMLLKFCVVNIDQNYISSSRLVHVDHQILQDRSKYWKINQAMLVTLQR 564
Query: 168 DHKYNYYMYTELFTMYNFTKNPVYAIGCCRYFLI 67
+ + + Y E ++YNF K P + + Y ++
Sbjct: 565 LYNFYRFQYLEEQSLYNF-KIPGFPLCILEYGIV 597
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 362 KPLYRVTECNILVSPAAVIVLDKLLSIQRNIGLKVTEWQSFCNTSNKISQLDNV 523
KP V + + P V + IQ NIG KV +W + S + + D++
Sbjct: 152 KPKPSVAQLFLSWLPKLSAVYGRYCVIQENIGKKVEKWMKNSSISEYLQECDSM 205
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 389 NILVSPAAVIVLDKLLSIQRNIGLKVTEWQSFCNTSNKISQLDNVN 526
N SP LL Q N+ + EW S KIS++ +N
Sbjct: 423 NAAPSPVGTFNRGTLLPCQSNLEEENKEWSSILQDDEKISKIGTLN 468
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 539 KTILFLFKIKGSVIYSVNRKAE 604
++ L+L K KG++++++NR AE
Sbjct: 572 ESTLYLVKAKGNMVFALNRAAE 593
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 3 LHLPDQPIMADRQ*RMIIAFSKSESIDNSQWHKPGFL 113
L+ QPI+ DR +I+ FSK + + ++ G +
Sbjct: 161 LYTHSQPILYDRDGSLIVRFSKGDQYIRNMYNTKGHI 197
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 204 KIYTIHTISKQNDHKYNYYMYTELFTMYNFTKNPVYAIG 88
++Y +T+S+ HK+N Y E + N K V G
Sbjct: 737 RVYEKNTLSEIAHHKFNEYEMVESIILMNDDKRVVVGTG 775
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 139 RTIYNVQFYKKPGLCHWLLSILSDLEKAIIILHCLSAII 23
R Y Q+ K+ GL + IL L AI+ L C AII
Sbjct: 19 RKAYLNQWAKRSGLAIAAICILGILILAIVKLFCFKAII 57
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 390 LHSVTRYNGLLEKFKQRTI*NFLFIRYYISTTPKFTNYRLFCSINY 253
L + YN L F +R ++ +Y+S P F RLF I++
Sbjct: 462 LWTFREYNELQHFFDERINDSYAAASHYVSQFPDFNMIRLFKYISF 507
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 326 KFQIVLCLNFSSKPLYRVTE 385
KF +VL N KPL+R+ E
Sbjct: 119 KFSVVLSSNLKEKPLFRLEE 138
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -3
Query: 462 FKPMFLCIDSSLSSTMTAAGETKILHSVTRYNGLL--EKFKQRTI*NFLFIRYYI 304
F +FL S L T A KI+ S+T + LL K Q+ + + L+ YI
Sbjct: 1394 FLDLFLLEVSDLKQTECNAQSDKIIKSITYWQSLLFNSKTYQKDLFSLLWYAVYI 1448
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 416 IVLDKLLSIQRNIGLKVTEWQSFCN-TSNKISQL 514
I+LD L QR + +K+ +S CN S++IS L
Sbjct: 36 IILDALSGHQRKLEIKIINIESKCNELSSEISLL 69
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 311 YRINRKFQIVLCLNFSSKPLYRVTECNILVSPAAV 415
Y R+ I LC PLYR C+ + PA +
Sbjct: 492 YFDQRECTICLCEYSEESPLYRELPCHHIFHPACI 526
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 67 LEKAIIILHCLSAIIGWSGRC 5
LEK I C+ A+I W+G C
Sbjct: 497 LEKKITEWGCMQALIDWNGWC 517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,733
Number of Sequences: 5004
Number of extensions: 55179
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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