Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18j19r
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.90 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.3  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    22   6.3  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    22   6.3  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    22   6.3  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    22   6.3  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    22   6.3  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   6.3  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    22   6.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 660 HYTQSRVDVVFVLPLRQPHDQGRAYNDQGSQSVGQYV 770
           H    R + +FVL L++P D  + Y  +G +  GQ V
Sbjct: 346 HEILKRANTLFVLTLQRPQDVDK-YPAEGLEMKGQMV 381


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 123 FKIKQSLFLLARRLAVSTVHTYQP 194
           F   + +F+L RRL     HTY P
Sbjct: 231 FTCLEVVFVLKRRLGYYLFHTYIP 254


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 320  EAPCALHCPPNDLCHNATCCGPNQQYN 240
            E P +   PPN L H A+     ++Y+
Sbjct: 1223 EEPTSQKVPPNQLTHEASELDKTRRYD 1249


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 123 FKIKQSLFLLARRLAVSTVHTYQP 194
           F   Q +F L RRL     HTY P
Sbjct: 200 FTCIQIVFNLRRRLGYHLFHTYIP 223


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 701 TPSATRPGPSLQRSGIPKRRTVREGRLPSYSYVPDHWNSCSSCDSAFWPS 850
           T S+  PG +   + + KRR+V E  L + S      +S +S  SA  PS
Sbjct: 152 TGSSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPS 201


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 29  HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 64


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 29  HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 64


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 29  HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 64


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 29  HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 64


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 29  HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 64


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 29  HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 64


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 29  HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 64


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 278 HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 313


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 278 HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 313


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 278 HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 313


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 278 HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 313


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 278 HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 313


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 278 HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 313


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 277 HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 312


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 570 HLNMRGHSLEEDQRRLPEQRPHRGQNQYNEHYTQSR 677
           HL  R       + R  EQ+ ++ + +Y E+   SR
Sbjct: 278 HLRERTSRRRYSRSREREQKSYKNEREYREYRETSR 313


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +2

Query: 599  GGSAKTP*AEATPRPESI*RALYSEQGRCSVCTSTPSATRPGPSLQRSGIPKRRTVREGR 778
            GG+A+   A   P    +   +Y E      C S P    P  +  +S   +RR  R+ +
Sbjct: 1720 GGAAEASAAGLHPNNTLLHSFMYHEHAMTEGCASPP----PAATSMKSVSSRRRQQRKQQ 1775

Query: 779  LP 784
             P
Sbjct: 1776 TP 1777


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +2

Query: 599  GGSAKTP*AEATPRPESI*RALYSEQGRCSVCTSTPSATRPGPSLQRSGIPKRRTVREGR 778
            GG+A+   A   P    +   +Y E      C S P    P  +  +S   +RR  R+ +
Sbjct: 1716 GGAAEASAAGLHPNNTLLHSFMYHEHAMTEGCASPP----PAATSMKSVSSRRRQQRKQQ 1771

Query: 779  LP 784
             P
Sbjct: 1772 TP 1773


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,325
Number of Sequences: 438
Number of extensions: 5244
Number of successful extensions: 25
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)