Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18j19f
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.93 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 159 NNYQYPSVETSFKNSKCANSFVDNRLMFQYNI 64
           NNY+Y     ++ N+   N++ +N     YNI
Sbjct: 327 NNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNI 358


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 505 YKPLNGLNCNTEAKSHQEYCVHESAQNFSTSPAESV 398
           Y PL+  NC  E +S+  Y V +    +  +P   V
Sbjct: 167 YYPLDSQNCTVEIESY-GYTVLDVVMYWKETPVRGV 201


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 201 PIVQMLKLQFGLDVNNYQYPSVETS 127
           P+ Q L    G+   NY YP+++ S
Sbjct: 513 PVDQQLS---GISPRNYMYPNIDIS 534


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,397
Number of Sequences: 438
Number of extensions: 3801
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)