Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18j16f
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    31   0.13 
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.18 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.54 
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    29   0.72 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    27   2.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.9  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   8.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.9  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   8.9  

>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 529 FQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEM 693
           FQ+ +  Q  +   +E  LN+  Y  Y E+ P P   S  ++ E + E  E  EM
Sbjct: 89  FQLVDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENEGNEEIEESEEM 143


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +1

Query: 52  CVFYLKIQLVIKFTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTACIDYDGFL---NMK 222
           C+   K++    ++ V+L    KL  ++ FT  FV+ L A + +TAC    G+L     +
Sbjct: 113 CILNYKLEWT--YSGVLLHRPWKLFSLKPFTAAFVLLLAASYLATACFRMLGYLGTPRSR 170

Query: 223 LEHSLNCNDEKFCHRG-SITLKSIRTGVPIIDQI 321
              +   N++KF     S   + +  G+ +   +
Sbjct: 171 FHDNRRWNEQKFMELAVSAVEEQLSNGIQLFSNV 204


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 466 NGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYK 582
           NG+  V+N W+L NG  I +   +A++   +K+ T   K
Sbjct: 653 NGIQRVVNYWLLHNGFSIGIGDTIADA-DTMKEVTRTVK 690


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +1

Query: 556 LKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGE 690
           +++ TNE K++    L   ++AP+P+ +++I ++   + A +KGE
Sbjct: 6   VERNTNETKISVAIAL---DKAPLPEESNFIDELITSKHANQKGE 47


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 710 NDLLSFISPFSRASLSRSIFCIYDAVSGTGACSIYL 603
           N L+SF +PF +AS+      ++ + + TGA  I+L
Sbjct: 419 NFLISFFTPFIQASIGFKYGYVFASCNLTGAIVIFL 454


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 280  LKSIRTGVPIIDQILFNEKHL 342
            L  +R  +PI+D+  F EKHL
Sbjct: 1380 LNFLRNFIPILDEQKFREKHL 1400


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 463 ENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKL 585
           EN   + +   ++PNG  IAVN Q  N    LK A  E+KL
Sbjct: 477 ENRFGESVTVDLIPNGRNIAVNNQ--NKMNYLK-ALTEHKL 514


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -2

Query: 734  IYIQYLAKNDLLSFISPFSRA--SLSRSIFCIYDAVSG--TGACSIYLK*NLELSLYSLV 567
            +Y  YL +N + SFI  FSRA   L  S   + + +SG   G C +      +L+++S++
Sbjct: 1484 LYKYYLRRNFVSSFIDAFSRAFSELLSSNKDVLEVLSGLEAGQCLLITFAQNKLTVHSVL 1543


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 128 IINLFKYINT-TLVNLITSWIFK*KTH 51
           I+ ++ +  T +L NL++SWI   KTH
Sbjct: 299 IMYVYSWTGTVSLCNLVSSWILNTKTH 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,000
Number of Sequences: 5004
Number of extensions: 51978
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)