Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18j16f
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-7|CAA21610.1|  236|Caenorhabditis elegans Hypothetical ...    73   2e-13
Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical pr...    33   0.29 
U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    31   0.67 
Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    31   0.89 

>AL032637-7|CAA21610.1|  236|Caenorhabditis elegans Hypothetical
           protein Y43F8C.7 protein.
          Length = 236

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 29/46 (63%), Positives = 38/46 (82%)
 Frame = +1

Query: 622 PVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVPVAIFVM 759
           P PDTA+++QKMER++ A++ G   DNRSFLAKYWMYIVPV +F +
Sbjct: 175 PTPDTAAFVQKMEREKRAKQHGADADNRSFLAKYWMYIVPVVLFAV 220


>Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.5b protein.
          Length = 334

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 4   LIQLIIVPFKFEIIYGCVFYLKIQLVIKFTNVVLIYLNKLIIMQQFTLIFVVHLTALFAS 183
           +I  I+    F + Y  +F LKI+ +   +  +L+Y + L +     +  V+  TAL  S
Sbjct: 30  IIMTIVAIITFILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRS 89

Query: 184 TACID 198
               D
Sbjct: 90  FTLSD 94


>Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical
           protein F44F4.5a protein.
          Length = 336

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 4   LIQLIIVPFKFEIIYGCVFYLKIQLVIKFTNVVLIYLNKLIIMQQFTLIFVVHLTALFAS 183
           +I  I+    F + Y  +F LKI+ +   +  +L+Y + L +     +  V+  TAL  S
Sbjct: 30  IIMTIVAIITFILTYKALFILKIRPIFHSSTKILLYTSLLFVNVHAVIFMVIQNTALIRS 89

Query: 184 TACID 198
               D
Sbjct: 90  FTLSD 94


>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/27 (55%), Positives = 22/27 (81%), Gaps = 2/27 (7%)
 Frame = -2

Query: 149 IKVNCCIIIN--LFKYINTTLVNLITS 75
           IK NC +IIN  LFKYI+T+++ L+T+
Sbjct: 88  IKSNCDLIINKTLFKYIHTSVIFLLTT 114


>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 712 RMTCYPSFLPFHVPLCHVPFFVYMTQYRELELAQYILS 599
           R+  Y   + + + L H P +VY+  Y E +LA Y+L+
Sbjct: 310 RVLVYTGDISYSLYLVHWPIYVYVKHYYENQLAAYLLA 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,732,582
Number of Sequences: 27780
Number of extensions: 278777
Number of successful extensions: 932
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)