Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18j08f
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248...    30   2.1  
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668...    28   6.4  
09_03_0048 + 11880848-11880952,11881030-11881312,11882667-118827...    28   8.5  

>04_04_1320 -
           32623378-32623949,32624035-32624451,32624548-32624895,
           32625671-32625768,32625882-32626051,32627134-32627418,
           32628041-32628119,32628481-32628623,32629227-32629634
          Length = 839

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 359 VRGDLR-DYQVPNNCEAVSVWTLNRHGNRNPGKSVTVSVKEIADL 490
           +RGD + +  + ++C++V V   N+H  +NP  +  +++K   DL
Sbjct: 354 IRGDWKLNGYIVSDCDSVDVLYNNQHYTKNPEDAAAITIKSGLDL 398


>09_04_0687 +
           19465594-19465780,19465994-19466022,19466731-19466803,
           19467237-19467311,19467583-19467644,19467727-19467795,
           19468447-19468475,19468553-19468760,19468867-19469100,
           19469591-19470598
          Length = 657

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 326 SLYSSKTPYDTVRGDLRDYQVPNNCEAVSVWTLNRHGNRNPGKSVTVSVKEIADL 490
           + YSS     T  GDLRD ++P+     +  ++ +  N N   + T+ V  + DL
Sbjct: 405 AFYSSPLQPSTNVGDLRDNKLPSPTRLSNAHSVLKESNTNTTDTRTMLVLPLGDL 459


>09_03_0048 +
           11880848-11880952,11881030-11881312,11882667-11882770,
           11883998-11884416,11884698-11884998,11885136-11885232,
           11885719-11885864,11885975-11886103
          Length = 527

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 583 PGGIAIFPHGHWLRGTVR 636
           PGGI I P+  WLRG+ R
Sbjct: 108 PGGIQICPNLFWLRGSAR 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,708,006
Number of Sequences: 37544
Number of extensions: 283474
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)