Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18j08f
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-7|CAB00046.1|  208|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical pr...    29   2.5  

>Z75712-7|CAB00046.1|  208|Caenorhabditis elegans Hypothetical
           protein K04G2.9 protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 574 PSPFLEFLDVLSTQLTIAGVVTVNNFIFEVSYFF 473
           P PF   L   +  LT+A V  +  FIF ++YFF
Sbjct: 73  PGPFKGILFGQTILLTVASVAMLLTFIFLIAYFF 106


>Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical
           protein C05C10.1 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
 Frame = +2

Query: 605 LTGTGYEELYDIGKRIREKYP---HLVEG--SSNDFYFRPTN 715
           LTG G  E+ ++G+ IRE+Y    + +E   +S + YFR TN
Sbjct: 31  LTGRGMGEMNNLGRLIRERYVRKFNFLEPKYASKEVYFRSTN 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,105,123
Number of Sequences: 27780
Number of extensions: 265298
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)