Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18i13f
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    44   2e-05
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   3.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   8.8  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   8.8  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   8.8  

>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 24/74 (32%), Positives = 39/74 (52%)
 Frame = +3

Query: 327 SQLAVLKLYNIVVDDVISGVRNSFLDDGVDEQVLQELKQLWKTKLQASGATDXXXXXXXX 506
           S   V ++Y+ V+ DVI+  R+ F ++GVD+  L+EL+ LW++KL A+            
Sbjct: 2   SNSIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVATFPWAQAPV 61

Query: 507 XXXXXXQNFQKVNG 548
                 Q F  V+G
Sbjct: 62  GTFPIGQLFDPVSG 75


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 FQKFDIEMLRCELRRQIIGSKLN 234
           F   DI  +  ELR Q++G +LN
Sbjct: 5   FSALDIAAIAAELREQVVGCRLN 27


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 221 PIICLLSSHRNISMSNFWNS 162
           P+IC +SSH N + SN + +
Sbjct: 541 PVICSVSSHTNFTFSNVYKA 560


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 567 RTDMGHTSGQQEHSAPASSVAGTHTHHILDPNNKVPVQL 683
           R++  H     +H++ ASS +   +   L PNN  P++L
Sbjct: 174 RSNSVHEKQNTDHASNASSSSSVVSSPSLKPNNTSPLKL 212


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 598 CCPEVCPMSVLLCTTLLPFTF 536
           C PE+ P+S+ +C  + P+ F
Sbjct: 143 CIPELGPISMAICMDINPYDF 163


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 582 HTSGQQEHSAPASSVAGTHTHHILDPNNKVPVQLTLPAQPGVSRVPA 722
           H      H    SS A    +H+  P+ K+   +  P++    RVP+
Sbjct: 305 HHHHHHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPSPSEKKQDRVPS 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,049
Number of Sequences: 5004
Number of extensions: 50812
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)