Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18i13f
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0343 + 12732673-12732792,12732903-12733091,12733220-127333... 45 6e-05
08_02_0955 + 22994266-22995630 31 0.99
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 31 1.3
07_01_0775 + 5976883-5978109 29 3.0
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 29 4.0
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 28 7.0
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 28 7.0
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 28 9.2
03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715... 28 9.2
>05_03_0343 +
12732673-12732792,12732903-12733091,12733220-12733387,
12733468-12733522,12733646-12733704,12734784-12734909,
12737281-12737409,12737486-12737540,12737633-12737808,
12737903-12737986,12738602-12738625
Length = 394
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +3
Query: 339 VLKLYNIVVDDVISGVRNSFLDDGVDEQVLQELKQLWKTKLQASGA 476
V +Y V+DDVIS VR+ F+ GV + VL EL+ LW+ K+ GA
Sbjct: 6 VSTVYISVIDDVISKVRDDFISYGVGDAVLNELQALWEMKMLHCGA 51
>08_02_0955 + 22994266-22995630
Length = 454
Score = 31.1 bits (67), Expect = 0.99
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +3
Query: 282 LLNNFQLQLDCKMTTSQLA--VLKL---YNIVVDDVISGVRNSFLDDGVDEQVLQELKQL 446
L N + QL K +T+QL+ V +L YN+++ V R+ L D +V + K++
Sbjct: 225 LHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRVTKSGRDPDLPTEHDREVYELSKKV 284
Query: 447 WKTKLQASGA 476
W TK +GA
Sbjct: 285 WGTKSGGAGA 294
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 561 HKRTDMGHTSGQQEHSAPASSVAGTHTHHILDPNNKVPVQLTLPAQPG 704
H+ T +GH SG + P +A H +DP+++ + + +PG
Sbjct: 746 HELTALGHKSGDEHQHVPNLGIANYHVGAHIDPSSR-KLTMLYKVEPG 792
>07_01_0775 + 5976883-5978109
Length = 408
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 613 GALCSCCPEVCPMSVLLCTTLLPFTFWKFC 524
G LC C P + CTT LP WKFC
Sbjct: 291 GHLCCCDVPPSPAADAACTTTLP--AWKFC 318
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 573 DMGHTSGQQEHSAPASSVAGTHTH-HILDPNNKVPVQLTLPAQPGVSRVPASFIYHSN 743
D+ H SG+++ S +S+ A +H H H + NN + ++ + V + H N
Sbjct: 1116 DLQHASGRKDSSLKSSNAARSHNHLHYANKNNLLTDGSSIQHRMAVLDTKGDSMVHEN 1173
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 154 KLCEFQKFDIEMLRCELRRQIIGSKLN*TDLETRIS 261
++CE K +E +R E ++ KLN D E +IS
Sbjct: 613 QICEINKDMVEKIRIETAVDLVNHKLNKRDEEEKIS 648
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 154 KLCEFQKFDIEMLRCELRRQIIGSKLN*TDLETRIS 261
++CE K +E +R E ++ KLN D E +IS
Sbjct: 587 QICEINKDMVEKIRIETAVDLVNHKLNKRDEEEKIS 622
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 624 VAGTHTHHILDPNNKVPVQLTLPAQPGVSRV 716
VAG+H H L P+ +P TLP P ++ V
Sbjct: 379 VAGSHHHFPLPPSQLMPQLGTLPISPPLAAV 409
>03_02_0939 +
12571052-12571173,12571219-12571309,12571413-12571512,
12571726-12571807,12571897-12571953,12572632-12572713,
12572792-12572884,12573984-12574047,12574161-12574246,
12574329-12574430,12574526-12574609,12574885-12574945,
12575010-12575091,12575173-12575250,12575867-12575931,
12576108-12576185,12576278-12576450
Length = 499
Score = 27.9 bits (59), Expect = 9.2
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 537 KVNG--SNVVHKRTDMGHTSGQ-QEHSAPASSVAGTHTHHILDPNNKVPVQLTLPAQPGV 707
KVN S V + TD G GQ + +AP++++A T + D +NK +PA +
Sbjct: 71 KVNAEYSAVKNLPTDQGR--GQVKSAAAPSTALALPGTQDVKDADNKGSSTAIVPAPHML 128
Query: 708 SRVPASFIYHSNSSIS 755
+ P S I N++I+
Sbjct: 129 PKAPDSTIPGKNTTIT 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,342
Number of Sequences: 37544
Number of extensions: 289964
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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