Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18i13f
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 597 QEHSAPASSVAGTHTHHILDPNNKVPVQLT 686
           +  S P + V G   HHI+D + K  +  T
Sbjct: 25  ENSSQPLAVVFGLSLHHIIDVDEKNQILTT 54


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 219 RL*TKLNRFRNKNI*FCEHFTLLNNF 296
           RL  K+  F +++    EHFT L NF
Sbjct: 78  RLFDKIRVFLDEDYSSAEHFTALGNF 103


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 585 TSGQQEHSAPASSVAGTHTHHILDPNNKV 671
           T  QQ+H+   +S   T ++    PN+K+
Sbjct: 122 TQQQQQHNNGYASPMSTSSYDPYSPNSKI 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,405
Number of Sequences: 438
Number of extensions: 3422
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)