Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18i08r
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    31   0.014
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   1.2  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    24   2.1  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   2.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 31.1 bits (67), Expect = 0.014
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = -1

Query: 854 CLVTGTLKAIEIMGKQNGGKGGTVLNISSVAALC---QSHLFPIYFGTKSAVLQFSNCIG 684
           C++   LK +    K+ G   G ++NI+  + L     +   P Y  +K A+   ++C+ 
Sbjct: 121 CMIQEVLKLM----KKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLR 176

Query: 683 LEEHYAKSGVRVLSICFGATDTPL 612
            E    +S ++V+SI     +T +
Sbjct: 177 SELAQCESNIKVISISPDLVETDM 200


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 417 NCISDVLCRFVCCDDPSVATFSMLIGL 497
           +CI ++L       DPS A FS  IGL
Sbjct: 335 DCIHELLGHMPLLADPSFAQFSQEIGL 361


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 494 AYEHAKSGDTWIITTNKPAKNITDTVK 414
           ++E +K+GD W  T++      T T K
Sbjct: 36  SFELSKNGDEWTFTSSSGDNTYTKTFK 62


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 494 AYEHAKSGDTWIITTNKPAKNITDTVK 414
           ++E +K+GD W  T++      T T K
Sbjct: 38  SFELSKNGDEWTFTSSSGDNTYTKTFK 64


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/37 (29%), Positives = 13/37 (35%)
 Frame = -1

Query: 176 KQKARPPCPPTGHRPWTPARYSTGAKFFTMSNFRPGR 66
           K K  P    +G   W       GAK      F PG+
Sbjct: 139 KHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMGFEPGK 175


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 851 LVTGTLKAIEIMGKQNGGKGGTVLNISSVAAL 756
           +VTG      ++G  NGG GG +   S ++A+
Sbjct: 30  VVTGASGGSIVVGANNGGGGGGLGIASGLSAM 61


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 163 APLAPRQGIAPGPRLGTP 110
           +P AP++G  P P  G P
Sbjct: 30  SPQAPQRGSPPNPSQGPP 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,096
Number of Sequences: 438
Number of extensions: 5887
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)