Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18i08f
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    85   6e-19
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   4.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 85.4 bits (202), Expect = 6e-19
 Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 9/202 (4%)
 Frame = +1

Query: 28  ESWKGKIVLITGAASGIGEGVVRLILERGVKHVAILDVAEDSGRALENELNTKYGPNCVK 207
           ++W  ++ L+TGA SGIG+ ++  ++ +G+K + I     D  + L  EL +K  P  + 
Sbjct: 3   QNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQV-DKMKTLVEELKSK--PGKLV 59

Query: 208 FYKCDVTVEELFLELFDTVKNEQGYLDVVINNAAI------MNDSYKSYKKQIDINVTAL 369
             +CD++ +   L++ + V+   G +D++INNA I       ND    +KK  DIN+  L
Sbjct: 60  PLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGL 119

Query: 370 VTGTLKAIEIMGKQNGGKGGTVLNI---SSVAALCQSHLFPIYFGTKSAVLQFSNCIGLE 540
                + +++M K+ G   G ++NI   S +  L  +   P Y  +K A+   ++C+  E
Sbjct: 120 TCMIQEVLKLM-KKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSE 178

Query: 541 EHYAKSGVRVLSICFGATDTPL 606
               +S ++V+SI     +T +
Sbjct: 179 LAQCESNIKVISISPDLVETDM 200


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 169 NELNTKYGPNCVKFYKCDVTVEEL 240
           N  N  Y  NC K Y   + +E++
Sbjct: 341 NNYNNNYNNNCKKLYYNIINIEQI 364


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 367 LVTGTLKAIEIMGKQNGGKGGTVLNISSVAAL 462
           +VTG      ++G  NGG GG +   S ++A+
Sbjct: 30  VVTGASGGSIVVGANNGGGGGGLGIASGLSAM 61


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 205 KFYKCDVTVEELFLELFDTVKNEQGYLDVVINNAAIMNDS-YKSYKKQIDINV 360
           ++ K   T +E F +  +  ++++  +   ++N  I N++ YK+Y K++  N+
Sbjct: 288 EYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKLYYNI 340


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 446 DIFRTVPPLPPFCFPIISIAFSVPVTKAVTF 354
           + F+  PPL  F    +    +V V KAVTF
Sbjct: 413 EAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,674
Number of Sequences: 438
Number of extensions: 5196
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)