Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18h22f
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0029 - 490433-490591,490930-491019,491860-492608,492996-49...    31   1.1  
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    28   7.8  

>09_01_0029 -
           490433-490591,490930-491019,491860-492608,492996-493047,
           493175-493276,493363-493494,493882-494109,494172-494321
          Length = 553

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -3

Query: 499 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 320
           D   G +  +D+G  D+    S  DDN+G     SG   + + DV          G G  
Sbjct: 242 DEDEGEEDDDDEGEEDDDEHRSENDDNDGAETGRSGEQADAATDVTCCKGDDTNEGIGSG 301

Query: 319 SRSNDNRSGLHG 284
            +  D+ +G +G
Sbjct: 302 GKGADDVTGCNG 313


>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = -3

Query: 475 SNDDGLRDNGALFS---LFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSND 305
           S D G  D G  F    +  D   L  D SG N     DV++ ++   RR     S  +D
Sbjct: 268 SLDHGSLDGGGGFEEGEIEGDTQNLDADDSG-NSELQDDVELEEDFDSRRIEEDGSCGHD 326

Query: 304 NRSGLH 287
            +S LH
Sbjct: 327 LKSNLH 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,168,012
Number of Sequences: 37544
Number of extensions: 156831
Number of successful extensions: 534
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)