Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18h11f
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0162 - 9050981-9051003,9051141-9052273,9052388-9053310,905...    31   0.77 
11_06_0210 + 21296782-21296909,21297135-21298844,21299127-212994...    29   4.1  
02_05_0601 - 30278455-30278572,30280211-30280676,30280748-302809...    29   4.1  

>05_03_0162 -
           9050981-9051003,9051141-9052273,9052388-9053310,
           9053560-9054615
          Length = 1044

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +1

Query: 262 GSNMDQDGAIIVAYNTTLGVGSCKYPMKMYTENARIYCFDNRICLEASNHIGMLPYILET 441
           G N  Q+  ++VA   T G+G      K++ + A    FD +I L  +  +  +  +   
Sbjct: 193 GKNKKQNAVVVVAVVGTGGIGKTTLAKKVFNDEAIKEAFDKKIWLSVTQDVNEVELLRMA 252

Query: 442 KRNLS 456
            R++S
Sbjct: 253 IRSVS 257


>11_06_0210 +
           21296782-21296909,21297135-21298844,21299127-21299418,
           21300210-21300519,21300890-21301110
          Length = 886

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 GSHEVILDEETEIANWGTPTIPLFPVDDQI 555
           GSHE+  D+E+++  WG+P +     DD I
Sbjct: 162 GSHEISYDDESDVF-WGSPVVHFRIRDDMI 190


>02_05_0601 -
           30278455-30278572,30280211-30280676,30280748-30280951,
           30281065-30281220,30281336-30281738
          Length = 448

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 764 WNS--SGLVISTFSLCTSLTAYFRIDT-KTDSGMSLNFRIVHIMFTKSPFSSKL 612
           WN   S LVI T  + T LT + R+D+ K  S +S+   +V ++ T    + KL
Sbjct: 162 WNGRFSILVIVTLGVFTPLTCFKRVDSLKYTSALSVALAVVFVVITAGITTIKL 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,702,924
Number of Sequences: 37544
Number of extensions: 397814
Number of successful extensions: 850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)