Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18h11f
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006645-8|AAF39848.1|  452|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z70756-11|CAA94793.2|  368|Caenorhabditis elegans Hypothetical p...    28   8.5  
AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AC006645-8|AAF39848.1|  452|Caenorhabditis elegans Hypothetical
           protein F56A4.10 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 553 IKGLLKLGLTERSICAQIIPNLLEKGDFVNIMCTIRKFSDIPESVL 690
           + GL+ +  T   + AQI  N       +NIM  + KF+D+P++++
Sbjct: 304 VAGLVVMAFTTNRVIAQIAFNFAIVSSGLNIMGVV-KFADLPKNLI 348


>Z70756-11|CAA94793.2|  368|Caenorhabditis elegans Hypothetical
           protein T06E4.7 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 202 ISTASSISLAWMGKNHLILFGSNMDQDGAIIVAYNTTL 315
           I T   +SL   GK+HL LFG +  ++  II+ + T L
Sbjct: 205 IQTQEELSL---GKHHLSLFGDDYSRNPLIIIFHGTLL 239


>AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical
           protein Y65B4A.6 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 442 KRNLSSLLGSHEVILDEETEIANWGTPTIPLFP-VDDQIKGLLKLGLTE-RSICAQIIPN 615
           +R + ++L + +VI   ++      T +I +   +D Q++    L L+  R +  QI   
Sbjct: 54  QRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKV 113

Query: 616 LLEKGDFVNIMC 651
           +L  GD++N+ C
Sbjct: 114 VLALGDYMNVQC 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,842,951
Number of Sequences: 27780
Number of extensions: 387340
Number of successful extensions: 1012
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)