Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18h04f
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 34 0.027
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac... 32 0.082
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 29 0.76
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 28 1.8
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 27 2.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.3
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 3.1
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 4.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 4.1
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 4.1
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.4
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 7.1
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 25 9.4
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 9.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 9.4
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 33.9 bits (74), Expect = 0.027
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Frame = +2
Query: 329 EDVKSMLENFEEIIKLAK--VENESQLNRMTQIEQDTFEMQVRAANIV-RAGES---LMK 490
++V+ +L+ + I K+ +E E +N +IEQD F + + V RA ++ L+
Sbjct: 3250 KNVQQLLKRDDFIPKILNYNLEKELSINLRRKIEQDYFSNPIFTFDSVNRASKACGPLLL 3309
Query: 491 LVSDIKQYL-ILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLEDEYFT 667
+ I Y +L +N + + KL + +EC Q+ ++ D+ L L++EY +
Sbjct: 3310 WIKSICNYSKVLEKLEPLNSEVDR-LKLEQKNAEECIQETIAACKDLDEKLLQLQEEYAS 3368
Query: 668 SI 673
I
Sbjct: 3369 MI 3370
>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 136
Score = 32.3 bits (70), Expect = 0.082
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +2
Query: 263 NMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEM 442
+ QR L Q L S + ++L F++I+ +A E + + + + +++
Sbjct: 5 SFQRQLVQRTNTLNSS----IDNATLTILSRFQDILDIAINEGKDKYT----VAPEVYQI 56
Query: 443 QVRAANIVRAGESLMKLVSDIKQYLILN----DFPSVNEAITQNSKLFRT 580
+ ++VRA E L+ + IK Y + N FP+V+ + K+ RT
Sbjct: 57 ECHTVSMVRAVEQLLDVSRQIKSYWLTNSLSTSFPTVDYSEPDLEKVKRT 106
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 29.1 bits (62), Expect = 0.76
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Frame = +2
Query: 356 FEEIIKLAKVENESQLNRMTQIEQ-DTFEMQVRA------ANIVRAGESLMKLVSDIKQY 514
F + +KL+ V+ L Q + DT E + A +V+ + +MK + +I+
Sbjct: 856 FPDSVKLSPVQQSVLLALGLQYKTIDTLEKEFNLPSNQLLAMLVKLSKKIMKCIDEIETK 915
Query: 515 LILNDFPSVNEAITQNSKL--FRTKQQECDQKLMSLRDDIAADLYDLEDEYFTSI 673
I + S + + NSKL F QQ +++L D+ L + + E +I
Sbjct: 916 DIEEELGSNKKTESSNSKLPEFTPLQQSLEEELQEGADEAMLALREKQRELINAI 970
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 113 GAI*YTTRVE-CTYQDEKLEIITSNNMNLSKEHNEK 9
GA Y+ +E CTY DEK E+ M + E E+
Sbjct: 93 GAEKYSVTMEPCTYTDEKFEVFKKYQMQVHLEKEEE 128
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 305 KSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIE 424
K+YT + KED +L E I K ENE LN T +E
Sbjct: 98 KAYTAKTKEDFAYLLSQLETIFK----ENEI-LNEFTPVE 132
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/127 (17%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Frame = +2
Query: 257 QTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEII---KLAKVENESQLNRMTQIEQ 427
Q+N + L +++ LL++ +++KE ++ +++ ++ K NE+ Q +
Sbjct: 75 QSNERYDLLEDERKLLENELSQIKEYLREKSSSYDTVLHDCSSLKSVNEALKQAQDQNLK 134
Query: 428 DTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQQECDQKL 607
T ++Q ++ + E + ++ D+K L + + TQ K E + +
Sbjct: 135 QTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLELQHTQQEKASLQTNYEFELQK 194
Query: 608 MSLRDDI 628
++ ++ I
Sbjct: 195 LTQKNSI 201
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 479 SLMKLVSDIKQYL-ILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLED 655
SL KL+ DI L DFPS++ T E D L + D + + YD E+
Sbjct: 354 SLWKLILDIAPDAGDLFDFPSLSSISKDLCVPIETPVSEIDISLTAYNDPVISPYYDTEE 413
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 338 KSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYL 517
+S++EN +I LAK+ NE + + +FE QV + + A L K SD+ +
Sbjct: 441 QSIVENMRAVINLAKLTNEI-CDSLYWNPSPSFESQVNSVRRIYARLELWK--SDLHSSV 497
Query: 518 ILND 529
+ ++
Sbjct: 498 VFDE 501
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 491 LVSDIKQYLILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLEDEYFTS 670
L+S++K N SV E ++ + K + K S+ D A + +L +YFT+
Sbjct: 754 LLSELKSR---NGNNSVEEGFSEEERSILLKLLSWNVKFCSISD--AGSVNNLLQQYFTA 808
Query: 671 IYK 679
IYK
Sbjct: 809 IYK 811
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 251 KEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQD 430
+ Q +Q N E S K +++S E+F IK ENE +++R+ Q E+D
Sbjct: 273 QHQAELQ-DFASNIEQKANSLIMEYKNELQSAEEHFSHKIKELTSENELKISRL-QEEKD 330
Query: 431 TFEMQVR 451
+ +V+
Sbjct: 331 SLLKKVQ 337
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -2
Query: 235 VAFNSFVSLFVIFSAVYNRDVTKQL 161
V +++ ++ +FS VY+RDV+++L
Sbjct: 863 VGYSTMYTMLPVFSIVYDRDVSEKL 887
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 227 KSYASLSNKEQT-NMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQL 403
+S+A + +Q+ MQR L Q + +LK EDV L+N EE+ + + S L
Sbjct: 358 QSFADDDDLQQSIAMQRRLAQKRAKILKP------EDVAEQLQNAEEVTDMTDSDTASGL 411
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 9.4
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = +2
Query: 299 LLKSYTTRLKEDVKSMLEN-FEEIIKLAKVENESQL--NRMTQIEQDTFEMQVRAANIVR 469
L +SY+ K++ +LE+ + +EN S + + +T + F+++ + I+
Sbjct: 44 LKRSYSATKKKNGNPVLESAIPSLSPSPSIENGSAMLNSDITSLSNRIFKVEEKLDLIL- 102
Query: 470 AGESLMKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQQECDQK 604
SL+K S+ DFPS+ I + L TK +E ++
Sbjct: 103 ---SLLKNSSEPLDRTERKDFPSLAMQIRDANSLVNTKLKEYSRR 144
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.4
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Frame = +2
Query: 251 KEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQD 430
+EQ +Q+S + + ++L+ + KED++ +E VE+ + Q+E
Sbjct: 101 EEQLELQKSQFEKRISILE----KEKEDLQRKMEELT-------VESMEVVRLTRQVETL 149
Query: 431 TFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVN---EAIT-QNSKLFRTKQQECD 598
+ + ++ + VR E K + D+K+ ++ + N E T QN +KQ +
Sbjct: 150 STQYSIQRSQWVREDEKKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQLDSL 209
Query: 599 QKLMSLRDD 625
+KL +D+
Sbjct: 210 EKLCERKDE 218
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +2
Query: 302 LKSYTTRLKED-VKSMLENFEEIIKLAKVENESQL---NRMTQIEQDTFEMQVRAANIVR 469
+K Y L V ++++ F ++ ++K L M+ E T+E VRA V
Sbjct: 1136 MKRYNVSLNAYIVNALIKGFTKVGMISKARYYFDLLECEGMSGKEPSTYENMVRAYLSVN 1195
Query: 470 AGESLMKLVSDIKQ 511
G M++V +K+
Sbjct: 1196 DGRKAMEIVEQLKR 1209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,536
Number of Sequences: 5004
Number of extensions: 53462
Number of successful extensions: 190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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