Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18h04f
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1025 - 23737339-23737572,23739027-23739092,23739184-23739330 66 3e-11
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 32 0.60
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047... 31 1.0
11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480 30 1.8
09_04_0287 - 16407324-16407551,16407647-16407748,16407824-164079... 30 1.8
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 29 4.2
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 28 7.4
>08_02_1025 - 23737339-23737572,23739027-23739092,23739184-23739330
Length = 148
Score = 66.1 bits (154), Expect = 3e-11
Identities = 33/125 (26%), Positives = 70/125 (56%)
Frame = +2
Query: 305 KSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRAGESL 484
K+ + DV S+++NF +I +A+V + N Q+ F+M +R + +V + +SL
Sbjct: 24 KTLLQKADADVSSLVDNFAALINIARVNDPPVRNT-----QEAFQMDMRGSRMVHSADSL 78
Query: 485 MKLVSDIKQYLILNDFPSVNEAITQNSKLFRTKQQECDQKLMSLRDDIAADLYDLEDEYF 664
+KLVS++K+ I + S+ E + + ++F + + ++ L + + A L +LE Y+
Sbjct: 79 LKLVSELKRTAIFSGLASLTENVDRRIEIFSQQVEGTERMLERIGQEAAGSLKELEAHYY 138
Query: 665 TSIYK 679
+S+ +
Sbjct: 139 SSVVR 143
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 31.9 bits (69), Expect = 0.60
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +2
Query: 236 ASLSNKEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEE---IIKLAKVENESQLN 406
A+ ++E+ +Q+S P E +++ T LK + +E K A +EN +
Sbjct: 577 ANSQDEEERVVQKSPPAQDEDVIEQETQTLKPSETMSADEIKEDDRTTKSADIENAGEAK 636
Query: 407 RMTQIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYLIL 523
T E + E Q RAA E K + K +++L
Sbjct: 637 NNTSNETNEKEKQERAATESNEKEDESKKHAKRKYFMLL 675
>03_05_0952 +
29103879-29103983,29104103-29104600,29104693-29104794,
29105552-29105898,29105967-29106153,29106242-29106417,
29106976-29107065,29107066-29107322,29107593-29107687,
29107801-29107920,29108111-29108230,29108410-29108508,
29108588-29108689,29108884-29109111
Length = 841
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 296 ALLKSYTTR-LKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRA 472
A+L+ + R +KEDV+ ML +EII A + N + + +EQ TF+ + + +
Sbjct: 531 AILRPFLLRRMKEDVEHMLPRKKEIIIYANMTNHQKEIQNHLVEQ-TFDEYLHEKSEIGM 589
Query: 473 GESLMKLVSDIKQYLILN 526
+ KL+ ++ +LN
Sbjct: 590 YPPVEKLLEQCGKFQLLN 607
>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
Length = 910
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +2
Query: 389 NESQLNRMTQIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYLILNDFPSVNEAITQNS 565
N +L M +I + + ++I+ A E+L+ D+++ L LN S+N+A TQN+
Sbjct: 676 NIRELRNMHKIRKLRIDGLCNVSSIIDANEALLHCKKDLQE-LELNFTASINDAHTQNA 733
>09_04_0287 -
16407324-16407551,16407647-16407748,16407824-16407922,
16408213-16408332,16408513-16408632,16408740-16408834,
16409109-16409365,16410134-16410309,16410401-16410587,
16410656-16411002,16411722-16411823,16411917-16412414,
16412520-16412624
Length = 811
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 296 ALLKSYTTR-LKEDVKSMLENFEEIIKLAKVENESQLNRMTQIEQDTFEMQVRAANIVRA 472
A+L+ + R +KEDV+ ML +EII A + + + + +EQ TF+ + + +
Sbjct: 501 AILRPFLLRRMKEDVEHMLPRKKEIIIYANMTDHQKQIQNHLVEQ-TFDQYLHEKSEIGL 559
Query: 473 GESLMKLVSDIKQYLILN 526
+ KL+ ++ +LN
Sbjct: 560 YPPVEKLLEQCGKFQLLN 577
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/95 (22%), Positives = 49/95 (51%)
Frame = +2
Query: 236 ASLSNKEQTNMQRSLPQNKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMT 415
+S++ K+ M ++ + +++Y T LKE V + L+ ++++ +E ES +
Sbjct: 686 SSVNMKKMQKMFQNAAEENVRNIRAYVTELKERV-AKLQYQKQLLVCQVLELESNEGKTN 744
Query: 416 QIEQDTFEMQVRAANIVRAGESLMKLVSDIKQYLI 520
+E+D+ E A ++ +S +L + Q++I
Sbjct: 745 DMEEDSEE---NAGSLQDGPDSWDRLFKEQMQHII 776
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 28.3 bits (60), Expect = 7.4
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Frame = +2
Query: 245 SNKEQTNMQRSLPQ-NKEALLKSYTTRLKEDVKSMLENFEEIIKLAKVENESQLNRMTQI 421
S KE + + L + ++ L+ S + +LE ++ +L + + +L+ ++ +
Sbjct: 720 SRKESSISSKCLDEVRQDILVLSSSIDSHVSANKVLER--KVTELESCKADLELH-ISDL 776
Query: 422 EQDTFEMQVRAANI-------VRAGESLMKLVSDIKQYLI-LNDFPSVNEAITQNSKL-F 574
EQ+ E+ R + + ES + D K ++ L D +A + +L F
Sbjct: 777 EQENIELSERISGLEAQLTYMTNEKESSELQIHDSKSLIVNLKDKVERQQAEMETQRLEF 836
Query: 575 RTKQQECDQKLMSLRDD 625
+ KQQE +KL +DD
Sbjct: 837 KQKQQEAQRKLSEAQDD 853
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,201
Number of Sequences: 37544
Number of extensions: 263396
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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