Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18h01f
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 58 9e-09
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 54 8e-08
AC024791-36|AAF60654.3| 481|Caenorhabditis elegans Innexin prot... 33 0.29
AF098996-1|AAM34815.1| 523|Caenorhabditis elegans Hypothetical ... 31 0.67
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 31 1.2
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 30 1.6
U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical pr... 29 2.7
U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical pr... 29 3.6
U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC006769-6|AAF60582.1| 274|Caenorhabditis elegans Hypothetical ... 29 4.7
Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical p... 28 6.3
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 28 6.3
Z83237-6|CAE17879.1| 549|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF040650-4|AAB95009.2| 291|Caenorhabditis elegans Hypothetical ... 28 8.3
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 57.6 bits (133), Expect = 9e-09
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 5/200 (2%)
Frame = +3
Query: 174 RIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHCWFDGTNQXXX 353
R++GGS ++ +P+ LL + G R CG SL+ N +LTAAHC+ ++
Sbjct: 57 RLIGGSESSPHSWPWTVQLLSRL---GHHR---CGGSLIDPNFVLTAAHCF--AKDRRPT 108
Query: 354 XXXXXXXXXXFSGGTRVETSSIVMHPNWSPATIRN-DVAVIYLPSPVTLSDTINTIALPS 530
G+ +++ +HP ++ + D A++ + PV S T I LPS
Sbjct: 109 SYSVRVGGHRSGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPS 168
Query: 531 GQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVCTFAFPFVLQ---SS 701
++ V +G+G T S++ L +++ +++ C+ ++ + S
Sbjct: 169 LPAVENRL----CVVTGWGSTIEGSSLSA-PTLREIHVPLLSTLFCSSLPNYIGRIHLPS 223
Query: 702 NLCTS-GRGGVGTCRGDSGG 758
LC G + +C+GDSGG
Sbjct: 224 MLCAGYSYGKIDSCQGDSGG 243
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 54.4 bits (125), Expect = 8e-08
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 7/211 (3%)
Frame = +3
Query: 147 AEEAGLSN-TRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHC 323
A +A S R+VGG G FP+ L N + CGAS++ L+TAAHC
Sbjct: 16 ARDAAKSRIARVVGGFETVPGAFPWTAALR-----NKATKAHHCGASILDKTHLITAAHC 70
Query: 324 WFDGTNQXXXXXXXXXXXXXFSGGTR--VETSSIVMHPNWSPATIRNDVAVIYLPSP-VT 494
+ + + G I +P + +D+A++ +P P +
Sbjct: 71 FEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYKDI-FSHDIAILEIPYPGIE 129
Query: 495 LSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVCTF 674
++ I LPS + G V SG+G S + + L + +IN F C
Sbjct: 130 FNEYAQPICLPSKDFVYTP--GRQCVVSGWG----SMGLRYAERLQAALIPIINRFDCVN 183
Query: 675 AFPFV--LQSSNLCTSG-RGGVGTCRGDSGG 758
+ + S C GG+ +C+GDSGG
Sbjct: 184 SSQIYSSMSRSAFCAGYLEGGIDSCQGDSGG 214
>AC024791-36|AAF60654.3| 481|Caenorhabditis elegans Innexin protein
21 protein.
Length = 481
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 43 YWWLTAVLLHCLCMKIRYTVTLLSMVYQKQRGFARLKRQD 162
YWW V LC I YT+ LL Y++ + ++ +D
Sbjct: 291 YWWFLLVSFISLCSAIHYTIILLVPQYRRHEFKSMIRTED 330
>AF098996-1|AAM34815.1| 523|Caenorhabditis elegans Hypothetical
protein T11F1.7 protein.
Length = 523
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 579 GFGLTSSSGSITTNQVLSHVNLDVINNFV 665
G+G TSS SIT N L+ N+DVI+NF+
Sbjct: 115 GYGCTSSGLSITNNSQLT--NIDVISNFL 141
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 270 VCGASLVTTNRLLTAAHCW 326
+CG +L+T +LTAAHC+
Sbjct: 61 ICGGTLITLKHVLTAAHCF 79
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Frame = +3
Query: 456 NDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSH 635
ND+ ++ L S + + N LP L E + S A + FG S G N
Sbjct: 176 NDIVILELESTIDDVEGANYACLPF---LPEVNIQSGANVTSFGWGSDPGKGFDNAAFPM 232
Query: 636 VNLDVINN---FVCTFAFPFVLQSSNLCTSGRGGVGTCRGDSGG 758
+ + + C + + + CT+ C GDSGG
Sbjct: 233 IQVLTLATETLATCEENWGTSIPFDSFCTAEEEDKNVCSGDSGG 276
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 264 TGVCGASLVTTNRLLTAAHCWFDG 335
T VCG L+ + ++T+AHC F G
Sbjct: 43 TNVCGGVLIAPSIVITSAHCVFSG 66
>U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical
protein B0286.6 protein.
Length = 279
Score = 30.3 bits (65), Expect = 1.6
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = +3
Query: 456 NDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSH 635
ND+AV L P+ S I LPS ++ +G+ L G ++ VL
Sbjct: 121 NDIAVFELEEPIEFSKDIFPACLPSAPKIPR------IRETGYKL-FGYGRDPSDSVLES 173
Query: 636 VNLDVINNFV--CTFAFPFVLQSSNLCTSGRGGVGTCRGDSG 755
L + +FV C+ FP+ CTS +C GDSG
Sbjct: 174 GKLKSLYSFVAECSDDFPY---GGVYCTSAVNRGLSCDGDSG 212
>Z70684-8|CAA94603.2| 360|Caenorhabditis elegans Hypothetical
protein F28D1.8 protein.
Length = 360
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/75 (22%), Positives = 28/75 (37%)
Frame = +3
Query: 393 GTRVETSSIVMHPNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAV 572
G R ++ PN + D V P+P + T + G E V +
Sbjct: 187 GNRSTIMILLQKPNTMKEKEKEDQKVSNNPAPAASASTEGATTVTEGTTAAETTVATETT 246
Query: 573 ASGFGLTSSSGSITT 617
A+G G T ++ + T
Sbjct: 247 ATGTGTTEAAATTVT 261
>U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical
protein F10D7.5c protein.
Length = 437
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 391 PLKSVTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCPLTTMVISRPP 221
P S T P T L+ ++PS A ++L +S + P R P TT + PP
Sbjct: 303 PALSTTRP-TIDDLLGEIIPSTPPPVAPRAVLGSSSSTSRLPNRSSPATTTAMMSPP 358
>U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical
protein F10D7.5a protein.
Length = 617
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 391 PLKSVTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCPLTTMVISRPP 221
P S T P T L+ ++PS A ++L +S + P R P TT + PP
Sbjct: 483 PALSTTRP-TIDDLLGEIIPSTPPPVAPRAVLGSSSSTSRLPNRSSPATTTAMMSPP 538
>AC006769-6|AAF60582.1| 274|Caenorhabditis elegans Hypothetical
protein Y45G12C.6 protein.
Length = 274
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 3 YTVMMKTFVATCLLLVAYGSAFTLPLHENPVYGYLT 110
YT++++T + C+L + G TLP + G +T
Sbjct: 186 YTLIIQTLIPMCILFIPTGFLLTLPFFDVKYVGRVT 221
>Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical
protein C25A1.10b protein.
Length = 696
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = -3
Query: 473 NDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVS 294
+DG + NG ++P+ + ++ AE + +D A+ L +PA + Q +
Sbjct: 87 DDGAVKKNGVQKPVNVAAKKSATPVQKKAESSSSSDSDAPAKKLTPVKKPAQTPAQKKAA 146
Query: 293 GNKRSSAD 270
+ S +D
Sbjct: 147 SSSDSDSD 154
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = -3
Query: 473 NDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVS 294
+DG + NG ++P+ + ++ AE + +D A+ L +PA + Q +
Sbjct: 87 DDGAVKKNGVQKPVNVAAKKSATPVQKKAESSSSSDSDAPAKKLTPVKKPAQTPAQKKAA 146
Query: 293 GNKRSSAD 270
+ S +D
Sbjct: 147 SSSDSDSD 154
>Z83237-6|CAE17879.1| 549|Caenorhabditis elegans Hypothetical
protein R06B9.6 protein.
Length = 549
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 439 LLLPFVMMWPSFTYPVPLLCLIQSIR 516
++L F + W S TY +P L LI +R
Sbjct: 285 VILDFPIEWISLTYRIPFLLLISDLR 310
>AF040650-4|AAB95009.2| 291|Caenorhabditis elegans Hypothetical
protein T04B8.3 protein.
Length = 291
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 739 QVPTPPRPLVHKFEDCKTKGKANVQTKLFITSRFT 635
++ P PL H + + K KGK +V + T +FT
Sbjct: 188 ELEAEPFPLYHIYGNTKAKGKMHVLVAPYSTQKFT 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,415,719
Number of Sequences: 27780
Number of extensions: 403506
Number of successful extensions: 1429
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -