Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18g19f
         (1124 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   6.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   6.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   6.5  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 370 MMLIVKVTMAVEETETKTITLEMDTPTPAWLLKYVLKKIQT 492
           ++ ++ V +A+E+T +K +T+E    T   L K   KK  T
Sbjct: 9   LVALLLVLLAIEDTMSKKMTIEEAKKTIKNLRKVCSKKNDT 49



 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 667 IVKVTMAVEETETKTITLEMDTPTPAWLLKYVLKKIQT 780
           ++ V +A+E+T +K +T+E    T   L K   KK  T
Sbjct: 12  LLLVLLAIEDTMSKKMTIEEAKKTIKNLRKVCSKKNDT 49


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 370 MMLIVKVTMAVEETETKTITLEMDTPTPAWL 462
           M+++ K+T+ VEE    T T+ + T    WL
Sbjct: 517 MLVLPKLTLEVEEWNPLTDTVPIHTWIHPWL 547


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 274 SALQIYCLILATSNVTGLI 330
           SAL+ YC I+AT  V G++
Sbjct: 356 SALEDYCNIVATHLVCGIL 374


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 249 HIYKILCNVHEQLVYHLNLYE 187
           +IY++  +V +  VYH  LY+
Sbjct: 37  NIYELFWHVDQPTVYHPELYQ 57


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 252 LHIYKILCNVHEQLVYHLNLYEHRFQ 175
           L  YK L + H++L  H+N    +F+
Sbjct: 48  LRNYKTLISSHDELPGHINCDSSKFE 73


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 249 HIYKILCNVHEQLVYHLNLYE 187
           +IY++  +V +  VYH  LY+
Sbjct: 37  NIYELFWHVDQPTVYHPELYQ 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,245
Number of Sequences: 438
Number of extensions: 4805
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37957815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)