Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18g07f
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 30 0.28
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 2.6
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 26 6.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 6.0
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 6.0
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 26 6.0
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 7.9
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 7.9
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 25 7.9
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 30.3 bits (65), Expect = 0.28
Identities = 26/128 (20%), Positives = 59/128 (46%)
Frame = +2
Query: 236 ISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPKLSASAVAVNGQATIF 415
++DI+S++ + LAL +++V + + + P +D P + +A G A ++
Sbjct: 93 LNDIYSSNPMIRSLALRTLTSVNIKNFWVAAMDPIVRLLDDTDPYVRKTAAI--GIAKLY 150
Query: 416 GRELAVASSGSLVVEDIRLVSTVSLRLLPSINVRELSAVLTVGNVESALKVVLFGNDVSE 595
+ + S L+ ++S S + L+A++ + N + K+ F ++S
Sbjct: 151 SYDKKMVESSGLIDHLKEMLSDES----SVVVANSLAALMNIVNSSTGFKLT-FSREISN 205
Query: 596 KLNDALNN 619
KL +L +
Sbjct: 206 KLVKSLTD 213
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 584 DVSEKLNDALNNRLPELLETYNEQIR 661
D S+K L N L LLE Y +Q+R
Sbjct: 841 DTSQKYQSELKNELYALLEQYKKQLR 866
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 419 RELAVASSGSLVVEDIRLVSTVSLRLLPSI 508
RELA+++ GS I L S VSL L PS+
Sbjct: 352 RELAISTVGSSDSSGIFLASLVSLFLEPSL 381
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.0
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Frame = -1
Query: 394 DGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALE-SQFGYCARCAEDVRNWESVIA 218
DG + E E VDA S +++ D VADA++ + + + + WE
Sbjct: 75 DGAKKNNESFENPVDASFSGGWCKAAEITDSLVADAIQHAPSAHLPKILKLCDIWEKAST 134
Query: 217 FGFFDVDWVKSTFLDTRSDAVDGVHDQFFDQILAFSVKVNF*GHSNDAGSES 62
F ++ ++S DA+ D A S N G+ GS++
Sbjct: 135 FPPEKLESLRSKL----KDAMASTEPVSVDSAAAPSQSTNPEGNGGSVGSQA 182
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -1
Query: 277 QFGYCARCAEDVRNWESVIAFGFFDVDWVKSTFLDTRSDAVDG 149
+F YC +RN I FD W+ F + + +DG
Sbjct: 60 RFMYCGGTWNGIRNHLDYIQGMGFDAIWISPIFENVEGNDIDG 102
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Frame = -1
Query: 679 NTLNDLPDLLVVSF-----EEFGKSVVQSVIQLFGYVVAEENNFESGLNIANSKN 530
NTL+D D LV++F + +++++Q+F V AEE++ E +I ++K+
Sbjct: 163 NTLSDNFDRLVLNFCRNIFQLVKSGHIKTIVQIFKIVEAEESSDEVLKSIRDAKS 217
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 165 LLVSKNVDLTQSTSKKPKAITLSQFLTSS 251
LL+ KN+ +T+ K+P A L +F+ +S
Sbjct: 1435 LLIQKNLIVTKWDVKRPAAAALLEFVNTS 1463
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 593 EKLNDALNNRLPELLETYNEQIREIVERIILFI 691
EKL L++ P E +N I+ + ER++LF+
Sbjct: 30 EKLERLLSDAQPT--EKFNSLIKNMAERLVLFV 60
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 7.9
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Frame = +2
Query: 140 IVNTINRITSGIQERGLDPIYVEK-AEGDYTFPISDIFSASGTV-AELALEGISNVVVND 313
+V+ + I + I+ G P+YVEK + + S G V A E I V
Sbjct: 157 VVHQPSEIPTAIKALGDRPLYVEKFVPFSMEIAVMVVRSLDGKVYAYPTTETIQKDNVCH 216
Query: 314 VTFNLLRPTTFSIDLALPKLSASAVAVNGQATIFGRELAVASSGSLVV 457
+ + R FSI L+ AV A I+G E+ V G ++
Sbjct: 217 LVYAPAR-LPFSIQQRAQTLAMDAVRTFEGAGIYGVEMFVLQDGETIL 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,473
Number of Sequences: 5004
Number of extensions: 48018
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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