Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18g07f
(703 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein. 33 0.99
AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein prot... 31 3.0
U72355-1|AAC00056.1| 915|Homo sapiens Hsp27 ERE-TATA-binding pr... 31 4.0
L43631-1|AAC18697.1| 864|Homo sapiens scaffold attachment facto... 31 4.0
BC126219-1|AAI26220.1| 917|Homo sapiens scaffold attachment fac... 31 4.0
AB208780-1|BAD92017.1| 772|Homo sapiens scaffold attachment fac... 31 4.0
S80343-1|AAB35627.1| 659|Homo sapiens arginyl-tRNA synthetase p... 30 9.2
BT007394-1|AAP36058.1| 660|Homo sapiens arginyl-tRNA synthetase... 30 9.2
BC014619-1|AAH14619.1| 660|Homo sapiens arginyl-tRNA synthetase... 30 9.2
BC000528-1|AAH00528.1| 660|Homo sapiens arginyl-tRNA synthetase... 30 9.2
>AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein.
Length = 4243
Score = 33.1 bits (72), Expect = 0.99
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +2
Query: 203 VEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPKLSAS 382
+++ DYT + +I S +GT AE A E +S V D++ + P T+++ L P + +
Sbjct: 2040 IDRLRSDYTTLLCEIPSNNGTGAEQACE-VSVVNGKDLS-QSMTPFTYAVSLT-PLI--T 2094
Query: 383 AVAVNGQATIFGRELAVASSG-SLVVEDIRL 472
AV+ +T G L V SG S +ED+ +
Sbjct: 2095 AVSPKRGSTAGGTRLTVVGSGFSENMEDVHI 2125
>AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein protein.
Length = 1569
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 588 TSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKM 409
+ LP TLR+ +T PTV A + T S + +T LP AT+ + P +
Sbjct: 1283 SGLPPTATLRSTATKPTVTQATTRATASTASPATTSTAQSTTRTTMTLPTPATSGTSPTL 1342
>U72355-1|AAC00056.1| 915|Homo sapiens Hsp27 ERE-TATA-binding
protein protein.
Length = 915
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 367 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 245
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150
>L43631-1|AAC18697.1| 864|Homo sapiens scaffold attachment factor B
protein.
Length = 864
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 367 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 245
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 59 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 99
>BC126219-1|AAI26220.1| 917|Homo sapiens scaffold attachment factor
B protein.
Length = 917
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 367 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 245
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150
>AB208780-1|BAD92017.1| 772|Homo sapiens scaffold attachment factor
B variant protein.
Length = 772
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 367 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 245
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 130 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 170
>S80343-1|AAB35627.1| 659|Homo sapiens arginyl-tRNA synthetase
protein.
Length = 659
Score = 29.9 bits (64), Expect = 9.2
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Frame = +2
Query: 194 PIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVN--DVTFNLLRPTTFSIDLALP 367
P+ + K++G YT+ SD+ + + E + I VV N V F + I P
Sbjct: 372 PLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDP 431
Query: 368 KLSASAVAVNGQATIFGRELAVASSGSLVVEDIRLVSTVS---LRLLPSINVRELSAVLT 538
K+ + V G + G + + S E +RL+ + R + + +E VLT
Sbjct: 432 KV--TRVFHAGFGVVLGEDKKKFKTRS--GETVRLMDLLGEGLKRSMDKLKEKERDKVLT 487
Query: 539 VGNVESALKVVLFGNDVSEKLNDALNNRLPELLETYNEQI 658
+ +A V +G K D +NRL + + ++++ +
Sbjct: 488 AEELNAAQTSVAYG---CIKYADLSHNRLNDYIFSFDKML 524
>BT007394-1|AAP36058.1| 660|Homo sapiens arginyl-tRNA synthetase
protein.
Length = 660
Score = 29.9 bits (64), Expect = 9.2
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Frame = +2
Query: 194 PIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVN--DVTFNLLRPTTFSIDLALP 367
P+ + K++G YT+ SD+ + + E + I VV N V F + I P
Sbjct: 372 PLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDP 431
Query: 368 KLSASAVAVNGQATIFGRELAVASSGSLVVEDIRLVSTVS---LRLLPSINVRELSAVLT 538
K+ + V G + G + + S E +RL+ + R + + +E VLT
Sbjct: 432 KV--TRVFHAGFGVVLGEDKKKFKTRS--GETVRLMDLLGEGLKRSMDKLKEKERDKVLT 487
Query: 539 VGNVESALKVVLFGNDVSEKLNDALNNRLPELLETYNEQI 658
+ +A V +G K D +NRL + + ++++ +
Sbjct: 488 AEELNAAQTSVAYG---CIKYADLSHNRLNDYIFSFDKML 524
>BC014619-1|AAH14619.1| 660|Homo sapiens arginyl-tRNA synthetase
protein.
Length = 660
Score = 29.9 bits (64), Expect = 9.2
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Frame = +2
Query: 194 PIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVN--DVTFNLLRPTTFSIDLALP 367
P+ + K++G YT+ SD+ + + E + I VV N V F + I P
Sbjct: 372 PLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDP 431
Query: 368 KLSASAVAVNGQATIFGRELAVASSGSLVVEDIRLVSTVS---LRLLPSINVRELSAVLT 538
K+ + V G + G + + S E +RL+ + R + + +E VLT
Sbjct: 432 KV--TRVFHAGFGVVLGEDKKKFKTRS--GETVRLMDLLGEGLKRSMDKLKEKERDKVLT 487
Query: 539 VGNVESALKVVLFGNDVSEKLNDALNNRLPELLETYNEQI 658
+ +A V +G K D +NRL + + ++++ +
Sbjct: 488 AEELNAAQTSVAYG---CIKYADLSHNRLNDYIFSFDKML 524
>BC000528-1|AAH00528.1| 660|Homo sapiens arginyl-tRNA synthetase
protein.
Length = 660
Score = 29.9 bits (64), Expect = 9.2
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Frame = +2
Query: 194 PIYVEKAEGDYTFPISDIFSASGTVAELALEGISNVVVN--DVTFNLLRPTTFSIDLALP 367
P+ + K++G YT+ SD+ + + E + I VV N V F + I P
Sbjct: 372 PLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDP 431
Query: 368 KLSASAVAVNGQATIFGRELAVASSGSLVVEDIRLVSTVS---LRLLPSINVRELSAVLT 538
K+ + V G + G + + S E +RL+ + R + + +E VLT
Sbjct: 432 KV--TRVFHAGFGVVLGEDKKKFKTRS--GETVRLMDLLGEGLKRSMDKLKEKERDKVLT 487
Query: 539 VGNVESALKVVLFGNDVSEKLNDALNNRLPELLETYNEQI 658
+ +A V +G K D +NRL + + ++++ +
Sbjct: 488 AEELNAAQTSVAYG---CIKYADLSHNRLNDYIFSFDKML 524
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,067,636
Number of Sequences: 237096
Number of extensions: 1642731
Number of successful extensions: 4158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4158
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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