Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18g06f
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    64   2e-12
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.036
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 63.7 bits (148), Expect = 2e-12
 Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 9/204 (4%)
 Frame = +1

Query: 166 RIVGGAIAPINYHPYLAGLLIDINELQSPAACGGSILTPASILTAAHCWFDGRNRAVRFT 345
           RIVGG    IN  P +AG+       +    CG +I++   +LTAAHC  D      +  
Sbjct: 160 RIVGGTNTGINEFPMMAGIK---RTYEPGMICGATIISKRYVLTAAHCIID--ENTTKLA 214

Query: 346 VVLG-----TPFLFHGGLRIQASSIAVHHQYDF----RTFANDIAMLYLPRRIIFNHAVQ 498
           +V+G     +    +  +    + + +H +YD         NDIA+L   + I F   V 
Sbjct: 215 IVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVG 274

Query: 499 PIPLATDSLLSTDKAGMWAVAAGYGRYSDVINPTTNTMARNVFLQTISLETCRGYYGNVV 678
           P  L     L +  AG      G+G  S   N   + + +   L  ++   C  YYGN++
Sbjct: 275 PACLPFQHFLDS-FAGSDVTVLGWGHTS--FNGMLSHILQKTTLNMLTQVECYKYYGNIM 331

Query: 679 LDSNICTSGVGGVGICRGDSGGPL 750
           +  N   +   G   C+ DSGGP+
Sbjct: 332 V--NAMCAYAKGKDACQMDSGGPV 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.5 bits (63), Expect = 0.036
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 333 STFHCRT-GNPIPVPWWLKDSSVFHCSSSSIRLQNVCK 443
           +TF C   GNPI    WLKD        + +R+++V K
Sbjct: 325 ATFTCNVRGNPIKTVSWLKDGKPLGLEEAVLRIESVKK 362


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/71 (22%), Positives = 27/71 (38%)
 Frame = +1

Query: 403 IAVHHQYDFRTFANDIAMLYLPRRIIFNHAVQPIPLATDSLLSTDKAGMWAVAAGYGRYS 582
           +  HH+YD+      I    L  + I  H +     + DS++       W     Y    
Sbjct: 764 LLTHHEYDYELSRGYIDEKILENQNIITHMILNYVGSEDSVIPRILYLTW-----YSSNG 818

Query: 583 DVINPTTNTMA 615
           D+  P+T  +A
Sbjct: 819 DIKVPSTKVLA 829


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -1

Query: 192 WRNSSPNDALHKYLVLFRLLNLCSRFNANFFEPSYKFFVGAT 67
           + N SP      +L   +L ++CS  N   F     FFV  +
Sbjct: 8   YNNVSPLQCTSPFLGGPQLTDVCSASNGELFLALLNFFVATS 49


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 368 RNGVPSTTVKRTARFLPSN 312
           RNG   TT+  T  F P N
Sbjct: 297 RNGPTQTTLNATTLFCPPN 315


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 400 KTLESLSHHGTGMGFPVR 347
           K +++ SHH T  G P+R
Sbjct: 565 KMIQACSHHLTHKGKPIR 582


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 368 RNGVPSTTVKRTARFLPSN 312
           RNG   TT+  T  F P N
Sbjct: 387 RNGPTQTTLNATTLFCPPN 405


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 732 RFWRPINYYHQG 767
           R WRP  Y++ G
Sbjct: 116 RIWRPDTYFYNG 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,672
Number of Sequences: 438
Number of extensions: 5649
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)