Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f19r
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        28   0.11 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   9.8  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   9.8  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   9.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   9.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 552 PGLWPYTLHHESIQDCIIPPCPTASIPGPWVLPMISWRDL 433
           P L   T H +  +D +I   P  S PG  V+   SWR +
Sbjct: 111 PQLGNLTKHLQVFRDHLINQIPDKSFPGVGVIDFESWRPI 150


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 317 EPRSDSSSTNGSFRQTPPSNA 255
           +P SDS+ST      TPP+++
Sbjct: 351 KPISDSTSTTTETVNTPPASS 371


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 341 SRDTTSGTEPRSDSSSTNGSFRQTPPSNALLS 246
           ++   S   P+S  SST  S  +   S AL+S
Sbjct: 347 AKQMASPEPPKSSESSTGSSIPKLNLSTALMS 378


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 687 QNAPFVFSDLQFPGPSFDTWHQPRTPGGF 773
           + AP  F  ++    SFD  +  R P GF
Sbjct: 86  KRAPMGFQGMRGKKASFDDEYYKRAPMGF 114


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 687 QNAPFVFSDLQFPGPSFDTWHQPRTPGGF 773
           + AP  F  ++    SFD  +  R P GF
Sbjct: 87  KRAPMGFQGMRGKKASFDDEYYKRAPMGF 115


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 687 QNAPFVFSDLQFPGPSFDTWHQPRTPGGF 773
           + AP  F  ++    SFD  +  R P GF
Sbjct: 86  KRAPMGFQGMRGKKASFDDEYYKRAPMGF 114


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 687 QNAPFVFSDLQFPGPSFDTWHQPRTPGGF 773
           + AP  F  ++    SFD  +  R P GF
Sbjct: 86  KRAPMGFQGMRGKKASFDDEYYKRAPMGF 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,554
Number of Sequences: 438
Number of extensions: 6008
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)