Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18f19f
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 109 2e-24
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 99 2e-21
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 99 2e-21
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 99 2e-21
Z92825-8|CAB07316.2| 469|Caenorhabditis elegans Hypothetical pr... 34 0.089
Z75955-18|CAB00126.2| 469|Caenorhabditis elegans Hypothetical p... 34 0.089
Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 31 0.63
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin... 31 0.63
Z92813-2|CAB07284.1| 353|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z54237-10|CAJ43909.1| 684|Caenorhabditis elegans Hypothetical p... 29 3.3
Z54235-13|CAJ43902.1| 684|Caenorhabditis elegans Hypothetical p... 29 3.3
U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical pr... 29 3.3
U40060-9|AAA81147.1| 111|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical ... 29 4.4
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 28 5.8
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 28 7.7
U50198-1|AAA91259.2| 529|Caenorhabditis elegans Hypothetical pr... 28 7.7
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 109 bits (262), Expect = 2e-24
Identities = 69/214 (32%), Positives = 101/214 (47%), Gaps = 30/214 (14%)
Frame = +2
Query: 158 GGLRARDTPQFVTVTFDDGINVINIETYREV-------------------------LYGR 262
G LR +TPQFV +TFDD +N Y+++ L
Sbjct: 1496 GCLRPDETPQFVVLTFDDAVNGKTFSDYKKLFENDVLKSFKFKIKNFKKVIPNTLSLKNT 1555
Query: 263 SNSNRCPAGATFYVSHEYTNYQLVNELYNRGFEIALHSISHRTPQAFWADATYQNLVQEI 442
N N C ATF++SHE+TNY VN L + EIA +SISH + + +A + E+
Sbjct: 1556 INPNGCDVKATFFISHEWTNYDAVNWLVQKNMEIASNSISHESLE----NANTNRWLNEM 1611
Query: 443 GDQKRQMAHFASIPASAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGL-- 616
Q+R +A F P I G+R P L + G+ F++M + L W + NPG+
Sbjct: 1612 DGQRRILAKFGGAPEEEIVGIRSPQLALGGDNQFEMMIGAEFL----WDNSMSANPGIHG 1667
Query: 617 ---WPYTLHHESIQDCIIPPCPTASIPGPWVLPM 709
WP T+ ++ DC CP +S PG W +P+
Sbjct: 1668 EPFWPQTMDYQVAWDCNEASCPKSSFPGVWSVPL 1701
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 99 bits (238), Expect = 2e-21
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 4/211 (1%)
Frame = +2
Query: 89 LATPCDEE-ACKLPDCRCSSTNI--PGGLRARDTPQFVTVTFDDGINVINIETYREVLYG 259
L T C + +C+LP C C+ST P + PQ V ++FDD I I T + + G
Sbjct: 21 LLTECPRDGSCRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSLFSG 80
Query: 260 R-SNSNRCPAGATFYVSHEYTNYQLVNELYNRGFEIALHSISHRTPQAFWADATYQNLVQ 436
N N C TF+VSH++ NY L++ EI ++SI+ + T + +
Sbjct: 81 SIRNPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYK 136
Query: 437 EIGDQKRQMAHFASIPASAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGL 616
E + +A F+ I S I G R P L++ G+ +++M++ + +D + L +
Sbjct: 137 EQKGMRETLAEFSFIDRSHIIGTRAPELKIGGDAQYRMMSENNFTFD----NSMLVSSPY 192
Query: 617 WPYTLHHESIQDCIIPPCPTASIPGPWVLPM 709
WP TL H+ +C CPT S W +P+
Sbjct: 193 WPQTLDHKLAWEC-DGNCPTQSHKAIWEIPI 222
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 99 bits (238), Expect = 2e-21
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 4/211 (1%)
Frame = +2
Query: 89 LATPCDEE-ACKLPDCRCSSTNI--PGGLRARDTPQFVTVTFDDGINVINIETYREVLYG 259
L T C + +C+LP C C+ST P + PQ V ++FDD I I T + + G
Sbjct: 2090 LLTECPRDGSCRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSLFSG 2149
Query: 260 R-SNSNRCPAGATFYVSHEYTNYQLVNELYNRGFEIALHSISHRTPQAFWADATYQNLVQ 436
N N C TF+VSH++ NY L++ EI ++SI+ + T + +
Sbjct: 2150 SIRNPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYK 2205
Query: 437 EIGDQKRQMAHFASIPASAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGL 616
E + +A F+ I S I G R P L++ G+ +++M++ + +D + L +
Sbjct: 2206 EQKGMRETLAEFSFIDRSHIIGTRAPELKIGGDAQYRMMSENNFTFD----NSMLVSSPY 2261
Query: 617 WPYTLHHESIQDCIIPPCPTASIPGPWVLPM 709
WP TL H+ +C CPT S W +P+
Sbjct: 2262 WPQTLDHKLAWEC-DGNCPTQSHKAIWEIPI 2291
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 99 bits (238), Expect = 2e-21
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 4/211 (1%)
Frame = +2
Query: 89 LATPCDEE-ACKLPDCRCSSTNI--PGGLRARDTPQFVTVTFDDGINVINIETYREVLYG 259
L T C + +C+LP C C+ST P + PQ V ++FDD I I T + + G
Sbjct: 962 LLTECPRDGSCRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSLFSG 1021
Query: 260 R-SNSNRCPAGATFYVSHEYTNYQLVNELYNRGFEIALHSISHRTPQAFWADATYQNLVQ 436
N N C TF+VSH++ NY L++ EI ++SI+ + T + +
Sbjct: 1022 SIRNPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYK 1077
Query: 437 EIGDQKRQMAHFASIPASAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGL 616
E + +A F+ I S I G R P L++ G+ +++M++ + +D + L +
Sbjct: 1078 EQKGMRETLAEFSFIDRSHIIGTRAPELKIGGDAQYRMMSENNFTFD----NSMLVSSPY 1133
Query: 617 WPYTLHHESIQDCIIPPCPTASIPGPWVLPM 709
WP TL H+ +C CPT S W +P+
Sbjct: 1134 WPQTLDHKLAWEC-DGNCPTQSHKAIWEIPI 1163
>Z92825-8|CAB07316.2| 469|Caenorhabditis elegans Hypothetical
protein C13C4.2 protein.
Length = 469
Score = 34.3 bits (75), Expect = 0.089
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 360 RLLYIRSVTEPPRRSGLMPRIKTWSRKLEIRKDKWRILLASPLVQLKVCVSP 515
+L ++ S EP RSG+ P + RKLE D +L+ + + LK C SP
Sbjct: 200 KLTFVESKVEPLHRSGMPPGYRD-IRKLEEILDSKPVLVVTDIPNLKFCPSP 250
>Z75955-18|CAB00126.2| 469|Caenorhabditis elegans Hypothetical
protein C13C4.2 protein.
Length = 469
Score = 34.3 bits (75), Expect = 0.089
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 360 RLLYIRSVTEPPRRSGLMPRIKTWSRKLEIRKDKWRILLASPLVQLKVCVSP 515
+L ++ S EP RSG+ P + RKLE D +L+ + + LK C SP
Sbjct: 200 KLTFVESKVEPLHRSGMPPGYRD-IRKLEEILDSKPVLVVTDIPNLKFCPSP 250
>Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical
protein H39E23.1c protein.
Length = 1062
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -1
Query: 237 VSMLMTLIPSSNVTVTNCGVSLARNPPGILVDEHLQSGSLQASSSHGVANGSSVPRAAAT 58
++M +L+ S++ V++ SL ++P G++ EH+ S S SS A+ S R++AT
Sbjct: 363 ITMAQSLLSHSSINVSS---SLGQHPAGVITREHVTSSSASGSS----ASPSRYSRSSAT 415
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -1
Query: 237 VSMLMTLIPSSNVTVTNCGVSLARNPPGILVDEHLQSGSLQASSSHGVANGSSVPRAAAT 58
++M +L+ S++ V++ SL ++P G++ EH+ S S SS A+ S R++AT
Sbjct: 493 ITMAQSLLSHSSINVSS---SLGQHPAGVITREHVTSSSASGSS----ASPSRYSRSSAT 545
>Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical
protein H39E23.1c protein.
Length = 1062
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -1
Query: 237 VSMLMTLIPSSNVTVTNCGVSLARNPPGILVDEHLQSGSLQASSSHGVANGSSVPRAAAT 58
++M +L+ S++ V++ SL ++P G++ EH+ S S SS A+ S R++AT
Sbjct: 363 ITMAQSLLSHSSINVSS---SLGQHPAGVITREHVTSSSASGSS----ASPSRYSRSSAT 415
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -1
Query: 237 VSMLMTLIPSSNVTVTNCGVSLARNPPGILVDEHLQSGSLQASSSHGVANGSSVPRAAAT 58
++M +L+ S++ V++ SL ++P G++ EH+ S S SS A+ S R++AT
Sbjct: 493 ITMAQSLLSHSSINVSS---SLGQHPAGVITREHVTSSSASGSS----ASPSRYSRSSAT 545
>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1192
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -1
Query: 237 VSMLMTLIPSSNVTVTNCGVSLARNPPGILVDEHLQSGSLQASSSHGVANGSSVPRAAAT 58
++M +L+ S++ V++ SL ++P G++ EH+ S S SS A+ S R++AT
Sbjct: 493 ITMAQSLLSHSSINVSS---SLGQHPAGVITREHVTSSSASGSS----ASPSRYSRSSAT 545
>Z92813-2|CAB07284.1| 353|Caenorhabditis elegans Hypothetical
protein T28A8.2 protein.
Length = 353
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 296 FYVSHEYTNYQLVNELYNRGFEIALHSISHRTPQAFWADATYQNLVQEI 442
F S+ + QL N ++ + + + HRTP F ++TYQ ++ +
Sbjct: 46 FISSNFAVSKQLGNNIFELASILGISRVLHRTPVIFLQNSTYQYMLNRV 94
>Z54237-10|CAJ43909.1| 684|Caenorhabditis elegans Hypothetical
protein T11B7.4e protein.
Length = 684
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 213 PSSNVTVTNCGVSLARNPPGILVDEHLQSGSLQASSSHGVANGSSVPRAAATRS 52
PS++ T + LA +++DE+ ++G SS H GSS + + R+
Sbjct: 418 PSNDTTAEDSRNFLASRLGQVMIDENKKAGGSNGSSQHHNQQGSSYTKTSFERT 471
>Z54235-13|CAJ43902.1| 684|Caenorhabditis elegans Hypothetical
protein T11B7.4e protein.
Length = 684
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 213 PSSNVTVTNCGVSLARNPPGILVDEHLQSGSLQASSSHGVANGSSVPRAAATRS 52
PS++ T + LA +++DE+ ++G SS H GSS + + R+
Sbjct: 418 PSNDTTAEDSRNFLASRLGQVMIDENKKAGGSNGSSQHHNQQGSSYTKTSFERT 471
>U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical
protein W01A11.1 protein.
Length = 452
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = +2
Query: 158 GGLRARDTPQ----FVTVTFDDGINVINIETYREVLYGRSNSNRCPAGATFYVSHEYTNY 325
GGL R T V + + +G V + YRE+ R RC A YVS +
Sbjct: 344 GGLNKRFTNDELLTIVMIYWTNGNIVSSQRFYREMFLDR----RCEALGKRYVSTPTAHA 399
Query: 326 QLVNELYNR-GFEIALHS--ISHRT 391
+NELY+R E++ HS I+H T
Sbjct: 400 SGLNELYDRTPIEVSRHSYNITHYT 424
>U40060-9|AAA81147.1| 111|Caenorhabditis elegans Hypothetical
protein F38B6.1 protein.
Length = 111
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 465 RILLASPLVQLKVCVSPSFRCPVTQVSRLWQILTYCTTAP 584
+I A+P+ Q++ +PS P+ + +LW +L + TT+P
Sbjct: 30 KIFNAAPITQIE---NPSRPGPIKEYRKLWIVLIFKTTSP 66
>AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical
protein C18G1.6 protein.
Length = 464
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 203 FDDGINV-INIETYREVLYGRSNSNRCPAGATFYVSHEY 316
F +GI + N++ Y E L G S PA FYV+H +
Sbjct: 93 FYEGIEIPTNLKVYGESLEGSCPSTYGPAKPCFYVAHTF 131
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 524 MSGNTSFQVMADFDLLYDCTWPTTALTNPGLWPYTLHHESIQDCIIP----PCPTASIPG 691
MS ++S +DFD+ P ++P P ++HE +Q P P+ S PG
Sbjct: 1522 MSSSSSSPPASDFDISTHLITPPQEHSSPLTTPPIINHEYVQQVSSPVDIFSQPSTSEPG 1581
Query: 692 PWVLPM 709
P P+
Sbjct: 1582 PSSRPI 1587
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 95 TPCDEEACKLPDCRCSSTNIP 157
T C EA L CRC ST++P
Sbjct: 53 TECVSEAICLGTCRCKSTHVP 73
>U50198-1|AAA91259.2| 529|Caenorhabditis elegans Hypothetical
protein R04B3.1 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 544 ETCVTGHLKEGDTHTFNCTSGDASKMRHLSFLISNFLDQVLIRGISPE 401
E+CV +L+ D +F+ T G K RH S D+ +I G +P+
Sbjct: 258 ESCVAKNLEGMDLESFHKTEGADEKSRHEGNTKSITDDEHVISGDTPD 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,939,141
Number of Sequences: 27780
Number of extensions: 397857
Number of successful extensions: 1257
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -