Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f18r
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    62   1e-10
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    29   0.61 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    29   0.61 
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    27   4.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   4.3  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    26   7.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   9.9  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   9.9  

>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
 Frame = -1

Query: 827 PXMLNVYKGEGMPIYKNLFEKGNFYVKFDVVFPENHFANEEQLKQIETILPPRPAFVMPT 648
           P  L V  G+GM + +   + GN Y++F V FPE +FA  EQL  +E  LPPR     P 
Sbjct: 299 PNELKVLPGQGM-LSQRHHQPGNLYIRFHVDFPEPNFATPEQLALLEKALPPRKIESAPK 357

Query: 647 GEDVEEVNLMDYFTPSESSR-----GREEAYASDDEEHMHAG-PGVQCAHQ 513
               EE  ++    P+E  R         A + D++E    G PGVQCA Q
Sbjct: 358 NAHTEEC-VLATVDPTEKVRIDNNVDPTTATSMDEDEDEEGGHPGVQCAQQ 407


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -1

Query: 812 VYKGEGMPIYKNLFEKGNFYVKFDVVFPENHFANEEQLKQIETILPPRPAFVMPTGEDVE 633
           +  GEGM        +G+ Y++ D+ FP++      +++ +  ILP  P   +     ++
Sbjct: 317 IIPGEGMYKDSKTDLRGDLYLEVDIEFPKDGLIGTTEIEILRDILPSIPKVSVMDDTLID 376

Query: 632 EVNLMDYFTPSESSR-GREEAYASDD 558
            V       P + S  G +  YA++D
Sbjct: 377 SVR----GVPGDISHFGGDARYANED 398


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 809 YKGEGMPIYKNLFEKGNFYVKFDVVFP 729
           Y G GMP+ KN  ++GN  ++  V FP
Sbjct: 339 YPGFGMPLPKNPSQRGNMIIECKVKFP 365


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 680 LPPRPAFVMPTGEDVEEVNLMDY 612
           +P + A V+P G++ EE N++DY
Sbjct: 45  IPSKVAGVIPRGKEKEEWNVLDY 67


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 731 PENHFANEEQLKQIETILPPRPAFVMPTG 645
           P + F   +QL ++ T LPP  +  +PTG
Sbjct: 166 PPSSFITAKQLSRLPTPLPPPSSSSLPTG 194


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 755 YVKFDVVFPENHFANEEQLKQIETILPPRPAFVMP 651
           ++  D V PE+   +EE+ +++E  + P+  FV+P
Sbjct: 197 HIDHDFVIPEDEMLSEEEEQEVEKQILPK--FVVP 229


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 135 QYITSLFCLFHLLIVPIPF 191
           +++ S+   FHL ++PIPF
Sbjct: 869 EFLISIHSCFHLGVIPIPF 887


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 827 PXMLNVYKGEGMPIYKNLFEK 765
           P +LN+Y GE     +N+FEK
Sbjct: 722 PELLNMYVGESEANVRNVFEK 742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,921
Number of Sequences: 5004
Number of extensions: 55127
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)