Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f18r
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain (...    62   5e-10
Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical pr...    43   2e-04
Z47356-1|CAA87414.2|   82|Caenorhabditis elegans Hypothetical pr...    35   0.062
CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical ...    34   0.14 
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    31   1.0  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF101315-5|AAM34816.1|  457|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF016450-5|AAB65984.2|  280|Caenorhabditis elegans Serpentine re...    29   3.1  
Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    28   9.4  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    28   9.4  

>AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 19 protein.
          Length = 439

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
 Frame = -1

Query: 827 PXMLNVYKGEGMPIYKNLFEKGNFYVKFDVVFPENHFANEEQLKQIETILPPRPAFVMPT 648
           P ++    G+GMP  K    KGN +V+F+V FP+ HF ++E+   +     P    V  T
Sbjct: 333 PGVIRGVLGKGMPNKKYPELKGNLFVEFEVEFPKEHFLDDEKAYAVLKSCFPTSKVVNVT 392

Query: 647 GEDVEEVNLMDYFTPSESSRGR-EEAY--ASDDEEH-MHAGPGVQCAHQ 513
                EV+LM+Y    + SRGR  +AY   SD+E+H  H G GV+C HQ
Sbjct: 393 -PAAAEVSLMEY-DEKKYSRGRGGDAYNEDSDEEQHGGHHGQGVRCQHQ 439


>Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical
           protein F39B2.10 protein.
          Length = 402

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
 Frame = -1

Query: 818 LNVYKGEGMPIYKNLFEKGNFYVKFDVVFPENHFANEEQLKQIETILPPRPAFVMPTGED 639
           + V   EGMP+ +   +KG+  V+FDV FP+    N +  K++  +LP +   ++   ED
Sbjct: 302 VKVIHNEGMPMRRASSDKGDLLVQFDVKFPDK--INPDAAKKLADLLPGKREEII--DED 357

Query: 638 VEEVNLMDYFTPSESSRGREEAYASDDEE-------HMHAGPGVQC 522
            E V L +   P  S R   E    DD E       H H   GVQC
Sbjct: 358 AEVVELTE-LDPQASRRNFAE---RDDFEGHGGFGGHGHGPQGVQC 399


>Z47356-1|CAA87414.2|   82|Caenorhabditis elegans Hypothetical
           protein T15H9.1 protein.
          Length = 82

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -1

Query: 806 KGEGMPIYKNLFEKGNFYVKFDVVFPENHFANEEQLKQIETI 681
           K EGMP  ++  +KG   V FDV FP+   ++E++ + IE +
Sbjct: 28  KDEGMPSLEDNNKKGMLVVTFDVEFPKTELSDEQKAQIIEIL 69


>CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical
           protein K09E10.1 protein.
          Length = 692

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -2

Query: 544 TLALAFNVLINSKICF-MCNSNLQQFIIGSVI*FYST 437
           T++ AFN ++ SK+ F    + + QF+IG +I FYST
Sbjct: 176 TISFAFNFILPSKVSFNSLLARIWQFLIGMIIYFYST 212


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 704 QLKQIETILPPRPAFVMPTGEDVEEV 627
           Q+KQ+ET + P+P FV+P+G    E+
Sbjct: 472 QVKQLETKVTPKPNFVVPSGTTTTEL 497


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 704 QLKQIETILPPRPAFVMPTGEDVEEV 627
           Q+KQ+ET + P+P FV+P+G    E+
Sbjct: 472 QVKQLETKVTPKPNFVVPSGTTTTEL 497


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 704 QLKQIETILPPRPAFVMPTGEDVEEV 627
           Q+KQ+ET + P+P FV+P+G    E+
Sbjct: 472 QVKQLETKVTPKPNFVVPSGTTTTEL 497


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical
           protein C13B4.1b protein.
          Length = 950

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 635 EEVNLMDYFTPSESSRGREEAYASDDEEHMHAGPGVQCA 519
           +E  L++ F  S+  +GR  A    ++EHM   P ++C+
Sbjct: 50  DETLLLELFVNSDEEKGRYVAVGFSNDEHMGNEPVIECS 88


>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
           protein C13B4.1a protein.
          Length = 1010

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 635 EEVNLMDYFTPSESSRGREEAYASDDEEHMHAGPGVQCA 519
           +E  L++ F  S+  +GR  A    ++EHM   P ++C+
Sbjct: 50  DETLLLELFVNSDEEKGRYVAVGFSNDEHMGNEPVIECS 88


>AF101315-5|AAM34816.1|  457|Caenorhabditis elegans Hypothetical
           protein T22H9.1 protein.
          Length = 457

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -1

Query: 725 NHFANEEQLKQIETILPPRPAFVMPTGEDVEEVNLMDYFTPSESSRGREEAYASDDE 555
           N     E +++     P  PA   P  ++VEE    D    SE S G EE    +DE
Sbjct: 165 NALGEFEDVEEDAEAAPAPPAPKKPKNQNVEEEGSEDELERSEGSEGSEEEEDDEDE 221


>AF016450-5|AAB65984.2|  280|Caenorhabditis elegans Serpentine
           receptor, class t protein68 protein.
          Length = 280

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 126 FCTQYITSLFCLFHLLIVPIPFLDFIS 206
           F T +ITS+ C++H +++P   +D  S
Sbjct: 227 FVTVHITSMICVWHSILIPEDLIDMTS 253


>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = -1

Query: 773 FEKGNFYVKFDVVFPENHFANEEQLKQIETILPPRPAFVMPTGEDVEEVNLMDYFTPSES 594
           F+   F  K   +F + ++  EE +++ E     +P F      D+E+ +  DY      
Sbjct: 373 FDPKEFDKKMQSIFNDEYYGVEENIQENED---EKPIF-----SDMEDSDYEDYDNLDVD 424

Query: 593 SRGREEAYASDDEE 552
              REE  A DD+E
Sbjct: 425 ELKREEQEADDDDE 438


>Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical
           protein Y37A1A.2 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 448 FYSTYISQIFKKKILC*QGLNCNSCNFILF-IFCNFSDSCFCQMTNKI*INSWIYKNIYL 272
           F    I ++ K K++    ++C S   +LF ++C+  +    + T+ +  N WI  + YL
Sbjct: 309 FIRPMIKRLHKYKLIVPMAVHCTSMAIVLFLVYCSVPNQATQRPTSDL-ANLWITPSRYL 367

Query: 271 T 269
           +
Sbjct: 368 S 368


>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
           protein F54C8.3 protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 164 KKTKQGCYILCTK*LININNYGQ*RALTYIILIFLFS 54
           KK  QGC+ L     +NIN+     AL YI L+F F+
Sbjct: 285 KKDGQGCHTLLFNVKLNINSSLWDTALRYIRLLFGFN 321


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
           protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 164 KKTKQGCYILCTK*LININNYGQ*RALTYIILIFLFS 54
           KK  QGC+ L     +NIN+     AL YI L+F F+
Sbjct: 285 KKDGQGCHTLLFNVKLNINSSLWDTALRYIRLLFGFN 321


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 800 EGMPIYKNLFEK--GNFYVKFDVVFPENH 720
           E   I+  +F K  GNF ++F   FP+NH
Sbjct: 702 EHFSIFSRIFRKKIGNFSIQFSKKFPKNH 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,041
Number of Sequences: 27780
Number of extensions: 314121
Number of successful extensions: 808
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)