Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f17r
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   8.4  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 569 HRGHCSPLSPGVFPELCHM 513
           H G C  + PG+F   C M
Sbjct: 95  HDGSCLYVPPGIFKSTCKM 113


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 569 HRGHCSPLSPGVFPELCHM 513
           H G C  + PG+F   C M
Sbjct: 95  HDGSCLYVPPGIFKSTCKM 113


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 569 HRGHCSPLSPGVFPELC 519
           H G C  + PG+F   C
Sbjct: 95  HNGSCLYVPPGIFKSTC 111


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 569 HRGHCSPLSPGVFPELC 519
           H G C  + PG+F   C
Sbjct: 163 HNGSCLYVPPGIFKSTC 179


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 569 HRGHCSPLSPGVFPELC 519
           H G C  + PG+F   C
Sbjct: 163 HNGSCLYVPPGIFKSTC 179


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 569 HRGHCSPLSPGVFPELC 519
           H G C  + PG+F   C
Sbjct: 95  HDGSCLYVPPGIFKSTC 111


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 569 HRGHCSPLSPGVFPELC 519
           H G C  + PG+F   C
Sbjct: 95  HDGSCLYVPPGIFKSTC 111


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 340 FILGRDLYWLFYYL 381
           F+L   +YW+FY L
Sbjct: 476 FMLFNAIYWIFYVL 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,334
Number of Sequences: 438
Number of extensions: 4374
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)