Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18f17f
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0370 + 2909216-2909797 42 4e-04
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 30 1.8
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 4.1
01_05_0721 + 24594815-24594834,24595207-24595313,24595417-245954... 28 7.2
01_05_0657 + 24034198-24036306 28 7.2
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 28 9.5
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 28 9.5
01_07_0005 + 40364385-40364732,40365299-40365448 28 9.5
>05_01_0370 + 2909216-2909797
Length = 193
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/93 (26%), Positives = 40/93 (43%)
Frame = +2
Query: 227 MGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAA 406
M A++++W E G L + QL+ +W P+ GL + ++ A
Sbjct: 98 MALAAWMVWAE-GGLHRRPGATLAPFVAQLVAALAWAPLALGLAAPAAGLACCAAMAAGA 156
Query: 407 VATTLSFGSVNKTAGLLLIPYLAWLGYASSLSY 505
A FG VN AG L P +AW + ++Y
Sbjct: 157 AACARGFGGVNPVAGDLAKPCVAWAVLLAVINY 189
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Frame = +2
Query: 419 LSFGSV-NKT---AGLLLIPYLAWLGYASSL 499
L+FGS+ N T G+LL+ LAWLG ASSL
Sbjct: 551 LTFGSLANSTPYLGGILLVIVLAWLGAASSL 581
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 143 SWYDELKKPSWTPPK 187
SW +E+KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614
>01_05_0721 +
24594815-24594834,24595207-24595313,24595417-24595472,
24595562-24595810,24595871-24596077,24596157-24596243,
24596331-24596426,24596500-24596715,24596908-24597090,
24597222-24597449
Length = 482
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -3
Query: 331 RPVE*QLYSVQCER*DCIFSKTITFLPDEVRGISHAAVENS 209
R +E + SV ER +FS T+ P+EVR ISH A++ +
Sbjct: 188 RDIERIIASVPKERQTLLFSATV---PEEVRQISHIAMKKN 225
>01_05_0657 + 24034198-24036306
Length = 702
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 365 KLAFIEISVLSG-AAVATTLSFGSVNKTAGLLLIPYLAWLGYASSL---SYYIWKNNPKP 532
+L IE+ VL G AA+ L GS + + + W+ YA+S+ SY + P
Sbjct: 3 RLVRIEVLVLLGVAALFVLLILGSYRRQSSRNAVRVSIWVAYAASIPMVSYTLGLMQSSP 62
Query: 533 VKGQ*RS*QWNILLY 577
K S W I+L+
Sbjct: 63 YKNSLFS-VWAIILF 76
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = -1
Query: 489 AYPSQAKYGMSNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC 310
AYP +++ N + V+ A E + SF+ +K+G ++ S
Sbjct: 695 AYPLWSRHETQNYETDRMLKSTSQVIDQAMAQLWEAKVKFVNVSFSVEKLGRSRSVAISD 754
Query: 309 TPYNVRGRTASSVKPSHSSQ 250
+ + R TA S +PS SQ
Sbjct: 755 SGHRSRQSTADSNEPSGDSQ 774
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = +2
Query: 419 LSFGSV-NKT---AGLLLIPYLAWLGYASSL 499
LSFGS+ N T G+LL+ LAWLG SL
Sbjct: 529 LSFGSLANSTPYLGGILLVIVLAWLGAVRSL 559
>01_07_0005 + 40364385-40364732,40365299-40365448
Length = 165
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 386 SVLSGAAVATTLSFGSVNKTAGLLLIPYLAWLGYASSLS 502
++L GA+VA L GSV GLLL+P++A + LS
Sbjct: 58 TMLLGASVALMLC-GSVTFAIGLLLMPWVAGVALLFGLS 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,053,505
Number of Sequences: 37544
Number of extensions: 494797
Number of successful extensions: 1259
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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