Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18f16r
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70284-18|CAJ80830.1| 474|Caenorhabditis elegans Hypothetical p... 37 0.015
Z70284-17|CAA94277.1| 517|Caenorhabditis elegans Hypothetical p... 37 0.015
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 31 0.75
AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin p... 30 2.3
Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical pr... 28 7.0
AC024817-13|AAL00869.1| 187|Caenorhabditis elegans Hypothetical... 28 7.0
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical pr... 28 9.2
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 28 9.2
>Z70284-18|CAJ80830.1| 474|Caenorhabditis elegans Hypothetical
protein K07F5.4b protein.
Length = 474
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 695 TRKTRMSRPLRKRMDGNCSERSGKRNPQRTETPRTGRPLPM 573
+ K R + K+ GN RSGKR P++ E+P++ +P+P+
Sbjct: 421 SEKNRKVKGGSKKKTGNRHNRSGKRTPKQEESPKSKKPVPL 461
>Z70284-17|CAA94277.1| 517|Caenorhabditis elegans Hypothetical
protein K07F5.4a protein.
Length = 517
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 695 TRKTRMSRPLRKRMDGNCSERSGKRNPQRTETPRTGRPLPM 573
+ K R + K+ GN RSGKR P++ E+P++ +P+P+
Sbjct: 464 SEKNRKVKGGSKKKTGNRHNRSGKRTPKQEESPKSKKPVPL 504
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
protein C05C9.3 protein.
Length = 1225
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 415 DYTLKINDITSLTQKQIFGYNTF 483
DY ++I++I ++TQ+Q+ GY TF
Sbjct: 403 DYDMEISEIETITQRQLEGYGTF 425
>AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin
protein 17 protein.
Length = 438
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 786 LPDEEYRLLKTLISARLVQSLILGAYTLEQDPKNTYVTSTEKANGWELLRKIRKTKPT 613
+P+EE + T R V+ ++ T Q P +T KAN W+ K KPT
Sbjct: 244 IPEEEEEITTTTRKTRPVKKVV---NTFRQKPTPAPEVTTTKANIWDKFTVGNKAKPT 298
>Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical
protein ZK1098.1 protein.
Length = 724
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -1
Query: 698 KTRKTRMSRPLRKRMD----GNCSERSGKRNPQRTETPR 594
K +K + RMD G S++S KR+P R+E+PR
Sbjct: 672 KEKKKKKKHSKEDRMDDEERGKKSKKSRKRSPSRSESPR 710
>AC024817-13|AAL00869.1| 187|Caenorhabditis elegans Hypothetical
protein Y54G2A.32 protein.
Length = 187
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 221 YFSNKSIFFKDQEDKKVEEYINYLFSTLLSNYYSTSGLA 337
Y NK++ F D +++YINYL++ +S Y T A
Sbjct: 85 YAQNKALTFIDYR-YSLKKYINYLYNQAISTKYLTKAEA 122
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
protein K08H10.7 protein.
Length = 1020
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 702 EQDPKNTYVTSTEKANGWELLRKIRKTKPTENGDPT 595
+ +PK T++ +K + LLR++ K KP N D T
Sbjct: 834 DPEPKYTFIV-IQKRHNTRLLRRMEKDKPVVNKDLT 868
>Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 360 MFVINFSDILLREKSITFRLHTKNK*HYFFNSKTNFWLQYFLLVAS 497
+FVI+F +LL + F L +N +FF ++ F + F+L+++
Sbjct: 51 LFVISFFLVLLAHTTSNFILFFRNLLEFFFINQLLFSILEFILISA 96
>Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 360 MFVINFSDILLREKSITFRLHTKNK*HYFFNSKTNFWLQYFLLVAS 497
+FVI+F +LL + F L +N +FF ++ F + F+L+++
Sbjct: 51 LFVISFFLVLLAHTTSNFILFFRNLLEFFFINQLLFSILEFILISA 96
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 702 EQDPKNTYVTSTEKANGWELLRKIRKTKPTENGDPT 595
+ +PK T++ +K + LLR++ K KP N D T
Sbjct: 834 DPEPKYTFIV-IQKRHNTRLLRRMEKDKPVVNKDLT 868
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,294,699
Number of Sequences: 27780
Number of extensions: 320151
Number of successful extensions: 1001
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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