Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18f13f
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 55 1e-08
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 52 6e-08
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 51 2e-07
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 50 3e-07
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 46 4e-06
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 45 1e-05
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 44 3e-05
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 40 5e-04
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 40 5e-04
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 38 0.001
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 38 0.002
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 37 0.003
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 37 0.003
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 36 0.006
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 36 0.008
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 35 0.010
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.013
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 34 0.018
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 33 0.054
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.13
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.13
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 31 0.13
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 31 0.17
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 31 0.22
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.22
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.51
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 29 0.51
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 29 0.51
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 29 0.67
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 29 0.88
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 0.88
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.88
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 28 1.2
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 2.0
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 27 2.7
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 27 3.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.6
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 26 4.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 8.2
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 8.2
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.2
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 54.8 bits (126), Expect = 1e-08
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +2
Query: 185 MLECNIC-LDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVIPLY 355
M +C++C + +D ++S+CGH FC+ C+ + +ETR R CP+C VIP++
Sbjct: 624 MCKCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRR--CPICGRGFGASDVIPIH 679
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 52.4 bits (120), Expect = 6e-08
Identities = 25/55 (45%), Positives = 28/55 (50%)
Frame = +2
Query: 182 RMLECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVI 346
R LEC IC D VVS CGH FC PCL Q L P CP C+ + V+
Sbjct: 165 RELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQ---CPTCRFGLPSPVVL 216
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 50.8 bits (116), Expect = 2e-07
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 191 ECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVIPL 352
+C++C++ + CGH+FCW C++ W + CP+C+A S K+I L
Sbjct: 255 KCSLCMEFIHCPAATECGHIFCWSCINGWTS---KKSECPLCRAFSSPSKIILL 305
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 50.0 bits (114), Expect = 3e-07
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +2
Query: 191 ECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVIPL 352
+C ICLD+ + + CGH+FC C+ L T + Q CPVC+ + KVI L
Sbjct: 205 KCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVICL 258
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 46.4 bits (105), Expect = 4e-06
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 194 CNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISR 334
C IC D + ++ CGHL+C CL WL+ S CP+CK +++
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSS---CPMCKTKLNK 1135
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 179 ERMLECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCK 319
++ LEC IC + + + CGH +C+ CL WL+ S CP C+
Sbjct: 80 KKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKS---CPTCR 123
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 194 CNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISRE 337
C IC + ++ V G +FC+PC+ WL+ P + CPV +SR+
Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCIQVWLQRHPFK--CPVTNLELSRK 302
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 185 MLECNIC-LDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVIPLY 355
ML+C++C + ++ CGH FC C+ + E + S CP C+ S ++ ++
Sbjct: 636 MLKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTS--TCPQCETPFSVSDILTIH 691
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 188 LECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKA 322
L C IC + R +++ C H FC C+ +L P +CP C+A
Sbjct: 27 LRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHP---MCPACRA 68
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 173 HDERM-LECNICLDTARD-----AVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISR 334
+D+ M L C IC D + A CGH+F CL +WLE + CP+C+ +
Sbjct: 99 NDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLE---NHCTCPLCRKEVPH 155
Query: 335 EKV 343
E V
Sbjct: 156 ETV 158
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 176 DERMLECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQ--VCPVCKAAISREKVIP 349
++ + C IC + A+DA+ S C H FC C+ +++ + CP C +S + P
Sbjct: 705 NQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDLSAP 764
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 218 RDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCK 319
R+ +++ C HL+ CL QW+ET R +CPVC+
Sbjct: 640 RNYMLTPCHHLYHRQCLLQWMET---RSICPVCR 670
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 188 LECNICLD--TARDAVVSM-CGHLFCWPCLHQWLETRPSRQVCPVCKAAISREK 340
+EC ICL+ T D VV++ C H F PC+ +W+ R CP C + K
Sbjct: 319 VECVICLESFTKGDKVVALPCKHEFHRPCIAKWIV--DYRHACPTCNTEVPPPK 370
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 209 DTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPV--CKAAISREKVIPLY 355
D + + CGHLFC C E R CPV C+ I+++ + PLY
Sbjct: 157 DEKKSIFAAKCGHLFCSTCAK---ELRKKTVPCPVQHCRKRITKKFIFPLY 204
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 35.5 bits (78), Expect = 0.008
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 176 DERMLECNICLDTARDAV-VSMCGHLFCWPCLHQWLETRPSRQV 304
D ++ C CL+ A +S CGH++C+ CL +++ET + +V
Sbjct: 208 DFQLAACPFCLEEKPVAARMSRCGHVYCFSCLLRFVETPTAAEV 251
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 35.1 bits (77), Expect = 0.010
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 239 CGHLFCWPCLHQWLETRPSRQVCPVCKAAI 328
CGH+ + CL WLE +Q CP+C+ ++
Sbjct: 328 CGHILHFHCLRNWLE---RQQTCPICRRSV 354
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 194 CNICLDTARDAVV----SMCGHLFCWPCLHQWLETRPSRQVCPVCKA 322
C ICL+T + + C H F C+ QWL T CP+C+A
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACIDQWLTT--GNNSCPLCRA 810
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 34.3 bits (75), Expect = 0.018
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 182 RMLECNICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKA 322
R EC IC + A V C H+FC CL + + CP+C+A
Sbjct: 356 RDFECAICSNVAYKPVRLGCSHVFCLHCL--IILQKQKVDFCPLCRA 400
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 32.7 bits (71), Expect = 0.054
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +2
Query: 173 HDERMLECNIC---LDTARDAVVSMCG---HLFCWPCLHQWLETRPSRQVCPVCKAAIS 331
H E + EC IC L R CG H F CL++W ++ S + CP+C+++ +
Sbjct: 1551 HFEGVEECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSR-CPLCRSSFT 1608
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = +2
Query: 191 ECNICLDTAR--DAVVSM-CGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVIPLYGR 361
EC IC++ + D V+ + C H F C+ WL + C +C+A + R
Sbjct: 395 ECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGT---CAICRAPVDPNS----QQR 447
Query: 362 GNTKQEDPRNKVPPRPAGQRT 424
NT + P A T
Sbjct: 448 NNTSTDSANGHNPSNHANPST 468
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 176 DERMLECNICLDTARDAV-VSMCGHLFCWPCLHQWLETRPSRQVCPVCK 319
DER L C + + + C H F C+ QWL + S+ CP+C+
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTS--SQNSCPLCR 568
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.13
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 188 LECNICLDTARDAVVSM-CGHLFCWPCL 268
L+C++C+D + ++ + CGH C CL
Sbjct: 744 LQCSLCMDVVAELLIIVPCGHFLCRECL 771
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 31.1 bits (67), Expect = 0.17
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Frame = +2
Query: 182 RMLECNICLDTARDAV-VSMCG---HLFCWPCLHQW----LETR-PSRQVCPVCKAAISR 334
R+ EC++C DT + + CG H+F C+ +W +E R CP C++ +
Sbjct: 193 RLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQSNQTE 252
Query: 335 EKVIPLYGRGNTKQEDP---RNKVP 400
+ L G KQE P +N VP
Sbjct: 253 TSLHYLCWCG--KQEKPEFVKNLVP 275
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.22
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +2
Query: 194 CNICL-DTARDAVVSM--CGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVIPLYGRG 364
C IC D A D ++ + C H+F C+ W+ T + CP+C + + +
Sbjct: 205 CIICYADYAFDDILRVLPCEHVFHTQCIDTWMTT--MKASCPLCNEDYYK-YFLQMDAAS 261
Query: 365 NTKQEDPRNKVPPRPAGQRTEPEST 439
+ E+ +P P RT T
Sbjct: 262 SVTHENAAWSIPLSPGDSRTHSAET 286
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +2
Query: 194 CNICLDTARDAVVSM----CGHLFCWPCLHQWLETRPSRQVCPVCK 319
C +CL+ ++ + C H F PCL +W CPVC+
Sbjct: 208 CVVCLERMDSSITGLITIVCQHTFHCPCLQKW-----GNSSCPVCR 248
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.51
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 239 CGHLFCWPCLHQWLETRPSRQVCPVCKAAI 328
CGH +C+ C+ L+ + CP+CK I
Sbjct: 213 CGHTYCYACIMSRLKL-VNNVSCPICKHRI 241
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +2
Query: 182 RMLECNICLD--TARDAV-VSMCGHLFCWPCLHQW 277
R +CN+C D D ++ CGH+ C CL +
Sbjct: 170 RKFQCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDY 204
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 29.5 bits (63), Expect = 0.51
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 188 LECNICLDTA--RDAVVSM--CGHLFCWPCLHQWLETRPSRQVCPV 313
+EC D+A ++ V+ C H F + C+ +WL T R VCP+
Sbjct: 53 IECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNT---RNVCPL 95
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 227 VVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVIPLYGRGNTKQEDPRNKV 397
V+ G CW L +W P+R + +RE+++ + RGN K R+K+
Sbjct: 1038 VLPFSGRASCWKLLDEWTGFGPARAITK------NREELMRAHIRGNNKDIRERDKL 1088
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 28.7 bits (61), Expect = 0.88
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 194 CNICLDTARDAVVSM-CGHLFCWPCLHQWLETRPS 295
C IC D S C H FC C Q+L++R S
Sbjct: 131 CEICYDEGCLPFFSAECDHEFCLACYRQYLDSRIS 165
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 239 CGHLFCWPCLHQWLE 283
C + FCW CL W E
Sbjct: 312 CKYEFCWVCLGPWTE 326
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +2
Query: 191 ECNICL-DTARDAVVSMCGHLFCWPCLHQWLETRPSRQV----CPVCKAAISREKVI-PL 352
EC IC + ++ ++ C H C CL + ++ + R + C C+ + + V P
Sbjct: 876 ECPICCNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPF 935
Query: 353 YGRGNTKQ 376
+ + N Q
Sbjct: 936 FVKNNGTQ 943
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.88
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 170 KHDERMLECNICLDTARDAVVSMCGHLFCWPC 265
K ++ C IC R + + CGH FC C
Sbjct: 246 KKEDIPFVCLICKKDYRSPIATTCGHHFCEQC 277
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 239 CGHLFCWPCLHQWLETRPSRQVCPV 313
C H+F C+ WL T S+ CP+
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPM 76
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 206 LDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVI 346
LD R A + CGH F CL W CP+C+ + V+
Sbjct: 46 LDGLRIAKIP-CGHYFHNHCLESWCRV---ANTCPLCRTEFLKVDVL 88
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 197 NICLDTARDAVVSMCGHLFCWPCLHQWLETRPSRQVCPVCKAAISREKVIPL 352
++ DT + A + CGH+F + L Q+ E ++C C + VIP+
Sbjct: 110 HVMSDTYQFAYIVPCGHVFEYSALKQFGE-----KMCFQCNQVYEEKDVIPI 156
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 283 NQTQSASLSCLQGCHQQRESDPALWKRKHKAGRPKKQGAPPAGRTAHGAGEYERLP 450
+Q +S+S + + + S KR+ A P+K +PP T H ER P
Sbjct: 161 SQERSSSYNNFEDASSPQSSYHTPTKRRKNAV-PRKSSSPPLSSTKHAPQSTERRP 215
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 549 GLGSPKLNVEVKIP-NGKAPIPNDMWNPSPKPK-PGKPLVLSGSVRCPAGRGG 397
G+ S V K+ +G IP D + P PK P KP G+ PAGRGG
Sbjct: 90 GIVSSSFKVGDKVYLSGDKLIPLDRFLPKPKTVGPKKP---KGARNGPAGRGG 139
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 576 WAVPRGAALGLGSPKLNVEVKIPNG 502
W+VP +G+PK NV V + +G
Sbjct: 427 WSVPSAFGYAIGAPKRNVVVFVGDG 451
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 573 AVPRGAALGLGSPKLNVEVKIPNGKAPIPNDMWNPSPKPKPGKPLVLSGS 424
AVP A G+G+ +L P ++P+ + + SP PLV GS
Sbjct: 1464 AVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGS 1513
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -3
Query: 519 VKIPNGKAPIPNDMWNPSPKPKP-GKPLVLSGSVRCP 412
V +P+G P+P P P P G P V SV P
Sbjct: 1133 VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 135 RRLGATLVAKKTNMTKEC*NATSVWTQPVMQSSVCAATSSAGHVYINGWK 284
RR+ + L + M + TS+ Q ++ A +S+GHV +N W+
Sbjct: 76 RRVSSQLRELRFTMNDQPATVTSI----AYQGTLLVAGTSSGHVLLNDWR 121
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.4 bits (53), Expect = 8.2
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Frame = -2
Query: 553 ARPWITKIKCRGENSKR------EGSYPER----HVESLAEAETWEAARTLRLR-ALSCR 407
+RPW+ +I C G+ G Y +R + S+ E E R L R AL
Sbjct: 1378 SRPWVAEIACVGKAPNTYNLMLGGGFYGQRLNKLYRSSVQEKEILNLLRPLIKRYALERE 1437
Query: 406 PGGHLVSWVFLLCVSSSIE 350
G H WV + +++E
Sbjct: 1438 DGEHFGDWVIRAGIITAVE 1456
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 325 HQQRESDPALWKRKHKAGRPKKQGAPPAGRTAHGAGEYERLP 450
HQ+ E + + WKR+ R +++ P G A ER P
Sbjct: 5 HQESEVEYSRWKRERSPERSQRRSQSPPGE--QSAYHRERSP 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,420
Number of Sequences: 5004
Number of extensions: 63410
Number of successful extensions: 250
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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