Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18f13f
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.95 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    21   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 549 GLGSPKLNVEVKIPNGKAPIPNDMWNPSPKPKP 451
           G  S  + ++V I + + P+     +PSP P+P
Sbjct: 856 GCPSNMMELQVDIADSQQPLNLSKKSPSPSPRP 888


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 511 SKREGSYPERHVESLAEAETWEAARTLRL---RALSCRP 404
           SK+E +  E  V+ + E ET++   T+R+   R+LS  P
Sbjct: 157 SKKEQNAEEDIVDPVEENETYDEFDTIRIPIVRSLSKSP 195


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 329 SREKVIPLYGRGNTK 373
           S +KV PLYG G  K
Sbjct: 270 SNDKVHPLYGHGVCK 284


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 176 HVCLLRHQRRPQAPRGSLALD*SPPFPTLNL 84
           HV  L H   P  P     +  + P P LN+
Sbjct: 6   HVAQLPHHLSPNMPTMDSTVSSAKPEPELNI 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,362
Number of Sequences: 438
Number of extensions: 6003
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)